Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ACM26V_RS23810 Genome accession   NZ_CP181045
Coordinates   5018925..5021243 (+) Length   772 a.a.
NCBI ID   WP_416149238.1    Uniprot ID   -
Organism   Salipaludibacillus sp. HK11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5013925..5026243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM26V_RS23785 (ACM26V_23785) - 5014807..5015463 (+) 657 WP_416149233.1 YczE/YyaS/YitT family protein -
  ACM26V_RS23790 (ACM26V_23790) cymR 5015447..5015866 (+) 420 WP_416149234.1 cysteine metabolism transcriptional regulator CymR -
  ACM26V_RS23795 (ACM26V_23795) - 5015889..5017034 (+) 1146 WP_416149235.1 cysteine desulfurase family protein -
  ACM26V_RS23800 (ACM26V_23800) mnmA 5017056..5018162 (+) 1107 WP_416149236.1 tRNA 2-thiouridine(34) synthase MnmA -
  ACM26V_RS23805 (ACM26V_23805) - 5018243..5018917 (+) 675 WP_416149237.1 tetratricopeptide repeat protein -
  ACM26V_RS23810 (ACM26V_23810) recD2 5018925..5021243 (+) 2319 WP_416149238.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACM26V_RS23815 (ACM26V_23815) - 5021268..5021738 (+) 471 WP_416149239.1 hypothetical protein -
  ACM26V_RS23820 (ACM26V_23820) - 5021783..5021971 (+) 189 WP_416149240.1 hypothetical protein -
  ACM26V_RS23825 (ACM26V_23825) - 5021999..5022184 (+) 186 WP_416149241.1 hypothetical protein -
  ACM26V_RS23830 (ACM26V_23830) - 5022440..5023528 (+) 1089 WP_416149242.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 772 a.a.        Molecular weight: 87187.11 Da        Isoelectric Point: 4.8539

>NTDB_id=1097935 ACM26V_RS23810 WP_416149238.1 5018925..5021243(+) (recD2) [Salipaludibacillus sp. HK11]
MNESHEEEVKDYIKGELLHLIFHNEDTLYTVAKIRVNESAEKLDNKEVTVVGMMPEPERDLTYLFRGIFTDHPRFGIQYK
FDQFQKVLPETEQGIILYLSSDRFPGIGRKTAEAIVESLGVHCISRILEDRAVLKNIPKIKPEKATEIYETLMEDQGIEQ
VLLKLYEFGFGVQLAMKVYQAYQIEALKIIQSNPYRMVEDVEGIGFSKADLLGRKQGLTGNHPDRLKAAVLYVIQDQSLS
EGHVYVLNETVIEASKQLLEKGSYEEISAMDIAEQVILLGEEEKIIIEENRMYLPSLYFAERGIATNLQRLLANKKEMDE
YPESEFLKALGQVEEQLGLSYAPSQKEGIEQALRSPLLILTGGPGTGKTTVIKGLIEVIGQLKGISVNPGEYKDKKKDFP
ILMAAPTGRAAKRMTESTGLPASTIHRLLGYKGAEGDYFEKGEDDQLEGELLILDEMSMVDTWLANQLLKAVPNNMQVIF
VGDEDQLPSVGPGQVLADLLESGVIPSVQLIDIYRQSEGSKIIEFSHQIKHGELQTIDQKSKDIRFFPCEQEEVPEAVKQ
ICERAISKGFRAKDIQVLAPMYRGVAGVENLNDMLQTLFNPKSDQRREVPFGDVVYRIGDMVLQLVNNPEDNVYNGDRGE
IVAIFTEKENTKKQLQVVISFDGEEVIYTKPDLTQITHAYCCSIHKSQGSEFPIVIMPVVRGYYRMLRKKLIYTGITRAK
EFLLLCGDWKAMEIAVEANRDVKRHTTLKEKIKGLPQLEKEYMDEAKGAAKD

Nucleotide


Download         Length: 2319 bp        

>NTDB_id=1097935 ACM26V_RS23810 WP_416149238.1 5018925..5021243(+) (recD2) [Salipaludibacillus sp. HK11]
ATGAATGAATCTCATGAAGAAGAAGTCAAAGATTATATTAAAGGAGAGCTTCTTCATTTGATTTTCCATAACGAGGATAC
TCTTTATACAGTGGCGAAAATACGTGTGAATGAATCGGCGGAAAAACTTGATAATAAAGAAGTGACGGTCGTTGGAATGA
TGCCAGAGCCTGAGCGAGATCTCACTTATTTATTTCGAGGCATCTTTACGGATCATCCACGATTTGGGATCCAATATAAA
TTCGACCAGTTTCAGAAAGTATTGCCCGAAACGGAACAAGGAATTATTTTATATTTATCGAGTGACCGCTTTCCAGGAAT
AGGACGGAAAACAGCTGAAGCAATCGTTGAGAGCTTAGGTGTTCATTGTATTTCGAGGATTTTAGAAGATCGTGCAGTAT
TGAAAAATATTCCGAAAATAAAGCCAGAAAAGGCGACGGAAATTTATGAAACGTTGATGGAAGATCAAGGAATTGAACAG
GTGCTACTGAAGTTATATGAATTTGGATTCGGTGTTCAGCTTGCGATGAAAGTATATCAAGCTTATCAAATCGAAGCATT
GAAAATCATCCAATCAAATCCATACCGCATGGTAGAAGATGTTGAAGGGATTGGATTTTCTAAAGCCGACTTACTAGGGA
GGAAACAAGGGCTTACTGGAAATCATCCTGATCGTTTAAAAGCGGCCGTTTTATATGTGATTCAAGATCAGTCGTTGAGT
GAAGGGCATGTGTATGTTCTTAATGAAACGGTCATCGAAGCGTCGAAACAATTATTAGAAAAAGGTTCCTATGAAGAAAT
ATCGGCAATGGATATTGCGGAACAAGTAATTCTCCTAGGCGAAGAAGAAAAAATTATTATTGAAGAAAACCGGATGTATT
TGCCATCCCTTTACTTTGCTGAACGTGGAATTGCTACGAACCTCCAACGATTGTTAGCAAATAAAAAAGAAATGGATGAA
TATCCTGAGTCAGAGTTTTTAAAGGCTTTAGGGCAAGTAGAAGAACAGCTTGGTTTAAGTTATGCACCTTCACAAAAAGA
AGGGATTGAACAAGCACTTCGTTCCCCATTACTCATTCTGACAGGTGGACCTGGAACTGGGAAGACAACCGTTATAAAAG
GATTGATTGAAGTCATTGGTCAATTAAAAGGTATCTCAGTTAATCCAGGTGAATACAAGGATAAGAAAAAAGACTTTCCA
ATTTTAATGGCAGCACCTACAGGTCGAGCAGCTAAACGAATGACGGAATCGACAGGTCTACCCGCTTCCACGATTCACCG
ATTACTTGGATATAAAGGTGCGGAGGGCGATTATTTTGAAAAAGGAGAAGACGATCAACTAGAAGGAGAATTACTTATTC
TCGATGAGATGTCGATGGTCGATACTTGGTTGGCAAACCAGTTGTTAAAAGCTGTGCCAAATAACATGCAAGTGATCTTT
GTGGGAGATGAAGACCAACTTCCATCTGTAGGACCTGGACAAGTGTTGGCAGATTTACTAGAATCTGGAGTGATCCCATC
TGTTCAGCTTATTGATATTTATCGTCAGTCTGAAGGGTCTAAAATTATTGAGTTTTCCCATCAAATCAAACATGGAGAGC
TCCAAACAATAGATCAAAAAAGCAAAGATATACGTTTTTTCCCATGTGAACAGGAAGAGGTACCGGAAGCTGTAAAACAA
ATATGCGAACGGGCGATTTCAAAAGGGTTTCGGGCAAAAGATATTCAGGTATTAGCGCCAATGTATCGCGGGGTAGCTGG
TGTAGAAAACTTAAATGATATGCTACAAACGTTATTTAACCCTAAATCGGATCAGCGAAGGGAAGTTCCTTTTGGAGATG
TGGTTTATCGGATTGGTGATATGGTGTTACAGCTAGTCAATAACCCGGAAGACAATGTATACAATGGTGATCGTGGTGAA
ATCGTCGCGATTTTTACTGAAAAGGAGAATACAAAAAAGCAACTTCAAGTCGTTATTTCTTTCGATGGTGAAGAAGTTAT
TTATACGAAACCTGATTTAACACAAATAACTCATGCTTATTGTTGCTCGATTCATAAATCACAAGGAAGTGAATTTCCGA
TTGTAATCATGCCCGTTGTTCGGGGATATTACCGTATGCTTAGAAAAAAACTCATCTACACTGGAATTACACGAGCAAAA
GAATTTTTACTCCTTTGTGGTGATTGGAAAGCGATGGAAATCGCAGTTGAAGCAAATCGAGATGTTAAGCGACATACGAC
TTTAAAAGAAAAAATTAAGGGATTACCGCAATTGGAAAAGGAATACATGGATGAAGCAAAGGGTGCTGCTAAAGACTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-245)

AAA domain (AAA_30)

(341-537)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-657)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

54.839

96.373

0.529

Multiple sequence alignment