Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ACM26V_RS23715 Genome accession   NZ_CP181045
Coordinates   4997786..5000140 (+) Length   784 a.a.
NCBI ID   WP_416149220.1    Uniprot ID   -
Organism   Salipaludibacillus sp. HK11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4992786..5005140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM26V_RS23690 (ACM26V_23690) - 4993560..4993877 (+) 318 WP_416149215.1 post-transcriptional regulator -
  ACM26V_RS23695 (ACM26V_23695) secD 4994033..4995355 (+) 1323 WP_416149216.1 protein translocase subunit SecD -
  ACM26V_RS23700 (ACM26V_23700) secF 4995345..4996277 (+) 933 WP_416149217.1 protein translocase subunit SecF -
  ACM26V_RS23705 (ACM26V_23705) - 4996477..4997394 (+) 918 WP_416149218.1 cation diffusion facilitator family transporter -
  ACM26V_RS23710 (ACM26V_23710) - 4997391..4997717 (+) 327 WP_416149219.1 LapA family protein -
  ACM26V_RS23715 (ACM26V_23715) recJ 4997786..5000140 (+) 2355 WP_416149220.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ACM26V_RS23720 (ACM26V_23720) - 5000234..5000746 (+) 513 WP_416149221.1 adenine phosphoribosyltransferase -
  ACM26V_RS23725 (ACM26V_23725) - 5001190..5003379 (+) 2190 WP_416149222.1 RelA/SpoT family protein -
  ACM26V_RS23730 (ACM26V_23730) dtd 5003457..5003900 (+) 444 WP_416149223.1 D-aminoacyl-tRNA deacylase -
  ACM26V_RS23735 (ACM26V_23735) - 5003967..5004143 (+) 177 WP_416149224.1 hypothetical protein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88829.31 Da        Isoelectric Point: 4.7914

>NTDB_id=1097934 ACM26V_RS23715 WP_416149220.1 4997786..5000140(+) (recJ) [Salipaludibacillus sp. HK11]
MLQSKAEWIITEIDEIEVSELADKIGLSKIATRFLVQRGMKTKEDVDAFLHINESALNDPFLLKDMDKTVKRIQQAIESE
ERVLVFGDYDADGVTSTSLMYMTLKQLGANVGFYVPNRFTEGYGPNEKAFRHAAEESVSLIITVDTGISAVHEAEVAQEL
NIDLIITDHHEPPPVIPSAFAVINPKQQDCFYPNENLAGVGVAFKVAQALLGRIPEEYFDLVAIGTIADLVSLQGENRFL
ATRGIQSLCRSQRPGLKSLLEQAGSNAQEISEEQIGFLIGPRLNAAGRLDSADPAIELLITEDEMEADEIAQMIDDLNKE
RQQIVKEIAKKAENQVEMAGVPSVIIVGDVGWNAGVIGIVASRLVEKYYRPTIVLSFDEETGLAKGSARSINGFDMFESL
SQCREWLPHFGGHQMAAGLTMKLEHIDDLRDKLTTIAIETLSESDWRKSLNVDLPVSIDEVTIQAIHDLQQMAPFGMGNP
APKVLLEDVNLDMIKKIGANEDHLKLTLTNSERNIKLDGIAFRMGPVHDDISPLSKISTVGKLSVNEWNGQSKPQFVVED
MKVKEWQLFDYRGDKRLFQDDRMLNWEECVVVLFQKHSEKWLAKLPNHFTVIRNYHETSEISMLSKVKNLLLLDLPATID
QLEQLLQSRADYERIYVAFINEKDHFFTSIPSRDQFKWFYAFLAKRDLFDVKKNGQALAKHKDWSETSIDFMCKVFFELE
FVKIDNGVVAIQQQPTKKDLTDSFTYRKYFNQRDIENDLYYSSYRALKEWIDQKKKIKQATTSV

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=1097934 ACM26V_RS23715 WP_416149220.1 4997786..5000140(+) (recJ) [Salipaludibacillus sp. HK11]
ATGCTTCAATCGAAGGCAGAATGGATAATAACAGAAATTGACGAAATAGAAGTTTCTGAACTTGCAGATAAAATAGGTTT
ATCTAAAATAGCAACACGCTTTTTAGTTCAACGTGGGATGAAGACGAAAGAAGATGTCGATGCCTTTTTACATATAAATG
AAAGTGCTCTGAATGACCCTTTTTTACTTAAAGATATGGATAAAACCGTGAAAAGGATCCAGCAAGCAATTGAATCAGAA
GAAAGAGTACTTGTTTTCGGTGATTACGATGCAGATGGAGTAACGAGTACTTCATTAATGTATATGACCCTGAAACAATT
AGGCGCAAATGTTGGGTTTTATGTTCCGAACCGCTTTACAGAAGGGTATGGACCAAATGAAAAAGCATTTCGTCATGCGG
CAGAAGAGAGTGTGTCATTAATTATCACTGTCGATACTGGAATATCAGCTGTTCATGAAGCAGAAGTGGCACAAGAATTA
AACATAGATTTAATTATTACAGATCATCATGAGCCGCCTCCAGTTATCCCTAGCGCATTTGCGGTAATTAACCCTAAACA
ACAGGATTGCTTCTATCCAAACGAAAACTTAGCAGGAGTCGGTGTTGCGTTTAAAGTGGCACAAGCATTACTAGGCAGGA
TCCCAGAAGAATACTTTGACCTAGTGGCGATCGGCACGATTGCTGACTTGGTTTCGTTGCAAGGAGAAAATCGTTTCCTA
GCTACTCGTGGAATTCAATCACTTTGTAGGTCTCAGCGACCAGGATTAAAATCACTGTTAGAACAAGCTGGATCAAATGC
CCAAGAAATCAGTGAGGAACAAATCGGATTTTTAATTGGTCCTAGATTAAATGCAGCAGGTAGACTCGATTCTGCTGATC
CTGCAATCGAGTTATTGATTACGGAAGACGAGATGGAAGCGGATGAGATTGCACAGATGATTGATGATTTAAATAAAGAG
CGACAGCAGATTGTTAAAGAAATTGCTAAAAAAGCTGAAAATCAGGTAGAAATGGCAGGTGTACCTTCTGTTATTATCGT
TGGTGATGTTGGATGGAATGCTGGAGTTATTGGAATAGTCGCTAGTAGACTCGTTGAAAAATATTATCGTCCAACAATTG
TATTGAGTTTTGATGAGGAAACGGGATTAGCAAAAGGCTCTGCTCGAAGCATTAATGGGTTTGATATGTTTGAATCATTA
TCTCAGTGCCGAGAATGGTTGCCTCACTTTGGAGGTCATCAAATGGCAGCAGGATTAACAATGAAACTGGAGCACATTGA
TGATTTACGAGATAAATTAACAACCATCGCCATCGAAACGCTATCAGAATCAGATTGGAGAAAATCATTAAATGTAGATT
TACCAGTATCTATAGACGAAGTGACAATACAAGCAATTCATGATCTTCAGCAAATGGCACCTTTTGGAATGGGAAATCCA
GCTCCAAAAGTATTATTAGAAGATGTCAATCTCGATATGATCAAAAAAATTGGCGCAAATGAAGATCACTTGAAACTGAC
ATTAACTAATAGCGAACGTAACATTAAGTTAGATGGAATTGCTTTCCGCATGGGACCAGTTCATGACGATATCTCACCGC
TGTCCAAAATATCGACAGTAGGAAAACTGTCTGTAAATGAGTGGAATGGACAAAGTAAACCTCAGTTTGTAGTTGAGGAT
ATGAAAGTGAAAGAGTGGCAGTTGTTTGATTATAGGGGAGACAAGCGATTGTTTCAAGACGATAGAATGTTGAACTGGGA
AGAATGTGTTGTTGTATTGTTTCAAAAACATTCAGAAAAGTGGCTAGCCAAACTTCCAAATCATTTTACGGTGATAAGAA
ACTATCACGAAACATCTGAAATTAGTATGCTGAGTAAAGTGAAAAATCTTTTATTACTTGATCTTCCTGCTACGATCGAT
CAACTTGAGCAATTATTGCAAAGCAGAGCTGATTATGAAAGAATTTATGTCGCTTTTATCAATGAAAAAGATCATTTTTT
CACATCAATTCCATCAAGAGATCAATTCAAATGGTTTTATGCTTTTCTTGCCAAGAGAGATCTATTTGATGTTAAAAAAA
ATGGACAAGCATTAGCAAAACATAAAGATTGGTCAGAAACATCGATCGATTTTATGTGTAAAGTGTTTTTTGAGCTAGAA
TTTGTTAAAATAGATAATGGTGTAGTTGCAATTCAACAACAACCGACAAAAAAAGACTTAACTGACTCGTTCACGTATCG
TAAATATTTTAATCAACGAGACATTGAGAACGATTTATATTACTCTTCTTATCGTGCGTTGAAGGAATGGATAGATCAAA
AGAAGAAAATCAAACAAGCAACTACTTCTGTATAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-771)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(452-560)

DHHA1 domain (DHHA1)

(315-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

49.231

99.49

0.49

Multiple sequence alignment