Detailed information NTG0109745

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: ABWV75_RS06070
• Genome accession: NZ_AP031487
• Coordinates: 1188698..1191121 (+)
• Length: 807 a.a.
• NCBI ID: WP_353317482.1
• Uniprot ID: -
• Organism: Staphylococcus hominis subsp. novobiosepticus strain NBRC 113928
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1183698..1196121

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABWV75_RS06040 (SKB0068_11540)	-	1183705..1184127 (+)	423	WP_002448977.1	Rrf2 family transcriptional regulator	-
ABWV75_RS06045 (SKB0068_11550)	-	1184237..1184380 (+)	144	WP_017176172.1	SAS049 family protein	-
ABWV75_RS06050 (SKB0068_11560)	-	1184479..1185483 (-)	1005	WP_049336022.1	LLM class flavin-dependent oxidoreductase	-
ABWV75_RS06055 (SKB0068_11570)	-	1185683..1186822 (+)	1140	WP_353317480.1	cysteine desulfurase family protein	-
ABWV75_RS06060 (SKB0068_11580)	mnmA	1186826..1187938 (+)	1113	WP_064207356.1	tRNA 2-thiouridine(34) synthase MnmA	-
ABWV75_RS06065 (SKB0068_11590)	-	1188025..1188696 (+)	672	WP_155975604.1	tetratricopeptide repeat protein	-
ABWV75_RS06070 (SKB0068_11600)	recD2	1188698..1191121 (+)	2424	WP_353317482.1	ATP-dependent RecD-like DNA helicase	Machinery gene
ABWV75_RS06075 (SKB0068_11610)	alaS	1191401..1194031 (+)	2631	WP_155975606.1	alanine--tRNA ligase	-
ABWV75_RS06080 (SKB0068_11620)	-	1194096..1194356 (+)	261	WP_002448947.1	IreB family regulatory phosphoprotein	-
ABWV75_RS06085 (SKB0068_11630)	ruvX	1194357..1194785 (+)	429	WP_002455257.1	Holliday junction resolvase RuvX	-
ABWV75_RS06090 (SKB0068_11640)	-	1194800..1195108 (+)	309	WP_064207352.1	DUF1292 domain-containing protein	-
ABWV75_RS06095 (SKB0068_11650)	-	1195368..1196003 (+)	636	WP_071560936.1	O-methyltransferase	-

Sequence

Protein

• Length: 807 a.a.
• Molecular weight: 91738.26 Da
• Isoelectric Point: 4.7999

>NTDB_id=109745 ABWV75_RS06070 WP_353317482.1 1188698..1191121(+) (recD2) [Staphylococcus hominis subsp. novobiosepticus strain NBRC 113928]
MPNPTLFDYSMVKGTVDTILFQNKDNFYTVLKVDSIETNESFDNLPTVVGFFPNIVEGDVYTFKGQIVQHPRYGKQLKAE
TFEKELPQTKDAIISYLSSDLFKGIGKKTAQNIVNTLGENAINDILTDPSVLENVPSLAKTKQKQIVEQISANQESEKIM
IRLHDLGFGPKLSMAIYQFYQSETLKVLENNPYQLVYDVKGIGFQKADTLARNNGIAYNDSERLKAGLLYTLEEECIKQG
HTYLDENAVLEITEDMLSDKHLDETIEQQQLKHVLQTLFEEKKIILENSHVAIPSLYYSELKSVQNLYRIKTYKNHFKII
EQSDLQIHIGELEDQNNVNYAKSQQEALETAMNSKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLKYSDYQEDDYPIVL
AAPTGRASKRLQESTGLEAMTIHRLIGWNQDTQPEDILENEIKAKLIIIDEMSMVDSWLFHQFLSAVPLDAQIILVGDED
QLPSVGPGQVFKDLIESKAFPRVNLTEVYRQQDGSSIIDLAHRMKHHEPIDITKRYHDRSFIHCNVEQIPTVVEKVVSSA
VNKGYDMSDIQVLAPMYKGSAGIKRLNQVLQNILNPKEKDTREIEFSDITFRKGDKVLQLVNRPNDNIFNGDIGVIVGIF
WAKENALNKDVLVVDFEGNEITFTRQDLLELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKQSLVL
LGDPKAFDIALNTQGQERHTQLKTLIINYFGMSQVNIDVEENDEQINIDDKDDNNAVEHITLSEETIYQINPMINMGNVS
PYDFVEH

Nucleotide

• Length: 2424 bp

>NTDB_id=109745 ABWV75_RS06070 WP_353317482.1 1188698..1191121(+) (recD2) [Staphylococcus hominis subsp. novobiosepticus strain NBRC 113928]
ATGCCAAACCCTACACTATTTGATTACTCAATGGTTAAAGGAACAGTTGATACCATTCTATTTCAAAATAAAGATAACTT
TTATACTGTTTTAAAAGTAGATTCCATTGAAACTAATGAATCATTTGATAATCTGCCTACAGTTGTAGGGTTTTTTCCTA
ATATTGTTGAAGGAGATGTCTATACGTTTAAAGGACAAATTGTTCAACATCCTCGTTATGGTAAACAACTTAAAGCTGAA
ACATTTGAAAAAGAATTGCCTCAAACTAAAGATGCCATTATAAGTTATTTATCTAGTGACTTATTTAAAGGTATTGGTAA
AAAGACTGCTCAGAATATTGTAAATACATTAGGAGAAAATGCAATAAATGATATTTTAACTGATCCTTCTGTTCTTGAAA
ATGTTCCTAGTTTAGCAAAAACGAAACAAAAACAGATTGTAGAACAGATTAGTGCAAATCAAGAATCAGAAAAAATAATG
ATTCGCTTACATGACTTAGGTTTTGGTCCAAAATTATCTATGGCGATTTATCAATTCTATCAATCAGAGACTTTAAAAGT
TTTAGAAAACAATCCATACCAATTAGTTTATGATGTAAAAGGTATTGGTTTTCAAAAAGCTGATACATTAGCTAGAAATA
ATGGTATTGCTTATAACGATTCAGAACGTTTAAAAGCTGGATTATTATATACTCTTGAAGAAGAATGTATAAAACAGGGG
CATACGTATTTAGATGAAAATGCTGTATTAGAAATTACAGAAGATATGCTTTCAGATAAGCATTTAGATGAAACAATTGA
ACAACAACAATTAAAACATGTACTACAAACACTTTTTGAAGAAAAGAAAATTATTTTAGAGAATAGTCATGTTGCGATTC
CAAGTTTATACTATTCAGAACTTAAAAGTGTTCAAAATTTGTATCGTATCAAAACATACAAAAATCACTTTAAAATAATA
GAGCAATCAGATTTACAGATACATATTGGTGAACTAGAAGATCAAAATAATGTTAATTATGCTAAATCACAACAAGAAGC
ACTTGAAACGGCGATGAATTCGAAAATAATGTTACTGACTGGAGGTCCAGGAACAGGTAAGACAACTGTTATTAAAGGGA
TTGTAGAATTATATGCTGAAATTCATGGTCTATCTCTTAAGTATTCTGATTATCAAGAAGATGATTATCCAATCGTATTA
GCCGCCCCAACTGGAAGAGCATCAAAGCGTTTACAAGAATCAACTGGCTTAGAGGCAATGACGATTCATCGATTAATAGG
ATGGAATCAAGATACTCAACCAGAAGATATTCTTGAGAATGAAATTAAAGCTAAGCTCATTATAATTGATGAAATGTCAA
TGGTTGATTCTTGGTTGTTCCACCAATTTTTAAGTGCCGTTCCACTAGATGCACAAATCATTCTAGTAGGGGATGAAGAT
CAATTGCCATCTGTCGGTCCTGGCCAAGTATTTAAGGATTTAATTGAGTCTAAAGCATTTCCAAGAGTTAATTTAACTGA
AGTTTATCGCCAACAAGATGGTTCTAGCATTATTGACTTAGCGCATCGCATGAAACATCATGAGCCAATAGATATTACAA
AACGTTATCATGATAGAAGTTTTATTCATTGTAATGTAGAACAAATTCCAACTGTAGTGGAGAAAGTAGTATCTAGCGCT
GTAAACAAAGGATATGATATGAGTGATATTCAAGTTTTAGCACCTATGTACAAAGGAAGTGCAGGGATAAAAAGACTTAA
TCAAGTATTACAAAATATTTTAAATCCTAAAGAAAAAGATACAAGAGAAATAGAGTTTAGCGATATAACGTTTAGAAAAG
GAGACAAAGTTTTACAACTAGTCAATCGACCCAATGACAATATTTTTAATGGTGATATTGGCGTCATAGTAGGTATATTT
TGGGCTAAAGAAAATGCACTTAATAAAGATGTACTGGTTGTCGATTTTGAAGGAAATGAAATTACATTTACTAGACAAGA
TTTATTAGAACTCACACATGCTTATTGTACCTCAATCCATAAATCACAAGGGTCAGAATTTCCTATTGTCATTATGCCTA
TTGTCAAACAATATTTTAGAATGTTGCAAAGACCTATTTTATATACAGGTCTGACACGTGCAAAACAATCTTTAGTACTA
TTAGGAGATCCAAAGGCATTTGACATTGCCTTAAATACGCAAGGTCAAGAAAGACATACACAATTAAAAACACTAATTAT
AAATTATTTTGGTATGAGTCAGGTTAATATAGATGTAGAAGAGAATGATGAACAGATAAATATAGATGATAAAGATGATA
ATAATGCAGTTGAACACATTACTTTAAGTGAAGAAACAATTTATCAAATTAATCCAATGATTAATATGGGAAATGTTTCG
CCTTACGACTTTGTTGAACATTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (340-545)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (673-721)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (586-656)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	49.502	99.628	0.493