Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   ACM3H0_RS02955 Genome accession   NZ_CP180685
Coordinates   541693..542550 (-) Length   285 a.a.
NCBI ID   WP_000163024.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain M14     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 536693..547550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM3H0_RS02940 (ACM3H0_02940) pheT 537299..539704 (-) 2406 WP_000961585.1 phenylalanine--tRNA ligase subunit beta -
  ACM3H0_RS02945 (ACM3H0_02945) - 539758..540279 (-) 522 WP_000078403.1 GNAT family N-acetyltransferase -
  ACM3H0_RS02950 (ACM3H0_02950) pheS 540362..541402 (-) 1041 WP_000365658.1 phenylalanine--tRNA ligase subunit alpha -
  ACM3H0_RS02955 (ACM3H0_02955) endA 541693..542550 (-) 858 WP_000163024.1 DNA/RNA non-specific endonuclease Machinery gene
  ACM3H0_RS02960 (ACM3H0_02960) - 542625..542816 (-) 192 WP_000168511.1 DNA-directed RNA polymerase subunit beta -
  ACM3H0_RS02965 (ACM3H0_02965) murA 542818..544089 (-) 1272 WP_000357884.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACM3H0_RS02970 (ACM3H0_02970) - 544152..544382 (-) 231 WP_000602601.1 DUF1146 family protein -
  ACM3H0_RS02975 (ACM3H0_02975) - 544447..544860 (-) 414 WP_000068053.1 F0F1 ATP synthase subunit epsilon -
  ACM3H0_RS02980 (ACM3H0_02980) atpD 544873..546279 (-) 1407 WP_000094375.1 F0F1 ATP synthase subunit beta -
  ACM3H0_RS02985 (ACM3H0_02985) - 546353..547234 (-) 882 WP_000919082.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31396.40 Da        Isoelectric Point: 10.4835

>NTDB_id=1097394 ACM3H0_RS02955 WP_000163024.1 541693..542550(-) (endA) [Streptococcus agalactiae strain M14]
MTKKQKQITTSIVTLLFSLLAIGLGESKSLPNDHILKQVTDLIISNESGKNTSLKNVSGTPSRELSESVLTSNVKKQLGT
NIAWNQSGAFIINQNKTDLNAKVSSAPYAINEIKKVNNQIVPTKANALLTKATRQYRNREETGNGRTYWKPAGWHQINGL
KGSYNHAVDRGHLIGYALVGSLRGFDASTSNPKNIATQAAWANQANSNQSTGQNYYETLVRKALDRHKTIRYRVTLIYDR
DNLLSSGSHIEAKSSDGSLEFNVFIPNVQSGLLFDYATGKVKQTK

Nucleotide


Download         Length: 858 bp        

>NTDB_id=1097394 ACM3H0_RS02955 WP_000163024.1 541693..542550(-) (endA) [Streptococcus agalactiae strain M14]
ATGACAAAAAAACAAAAACAAATAACAACTTCGATTGTAACTTTGCTTTTTTCATTACTAGCAATAGGGTTAGGTGAAAG
CAAATCTTTGCCTAATGATCACATTTTAAAACAGGTGACAGATTTAATTATTAGTAATGAATCTGGCAAAAATACTTCCC
TTAAAAATGTATCAGGAACCCCTAGTAGAGAGTTATCTGAATCTGTTTTGACTAGCAATGTTAAAAAACAATTGGGAACA
AATATAGCTTGGAACCAGTCAGGTGCTTTTATCATTAATCAAAATAAAACAGATTTGAATGCTAAAGTGTCAAGTGCACC
ATATGCTATTAATGAAATAAAGAAGGTTAATAACCAAATTGTTCCGACTAAAGCAAATGCCTTATTAACAAAGGCAACTC
GTCAATATCGAAATCGAGAAGAAACAGGGAATGGTAGAACTTATTGGAAACCAGCTGGATGGCATCAGATAAATGGATTA
AAAGGGAGCTATAACCATGCTGTGGACAGAGGCCATTTAATTGGTTATGCTTTAGTAGGGAGTTTAAGAGGATTTGATGC
CTCCACAAGTAATCCTAAAAATATTGCCACACAAGCAGCTTGGGCAAACCAAGCTAATAGCAACCAATCAACAGGGCAAA
ATTATTATGAAACTTTAGTTCGTAAAGCATTGGATCGTCATAAAACTATTAGGTATCGTGTGACTTTAATTTATGATAGA
GATAATCTTTTATCTTCGGGATCACATATTGAGGCTAAATCTTCAGATGGAAGTTTAGAATTTAACGTTTTTATTCCTAA
TGTACAATCGGGATTATTATTTGATTATGCAACAGGAAAAGTGAAGCAGACAAAGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(87-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

65.948

81.404

0.537
  endA Streptococcus pneumoniae D39

65.948

81.404

0.537
  endA Streptococcus pneumoniae R6

65.948

81.404

0.537
  endA Streptococcus pneumoniae TIGR4

65.948

81.404

0.537

Multiple sequence alignment