Detailed information NTG0109679

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: ABWV32_RS05980
• Genome accession: NZ_AP031467
• Coordinates: 1196902..1199352 (+)
• Length: 816 a.a.
• NCBI ID: WP_353305061.1
• Uniprot ID: -
• Organism: Staphylococcus capitis strain NBRC 115779
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1191902..1204352

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABWV32_RS05955 (SKB0123_11710)	-	1192419..1192559 (+)	141	WP_002436115.1	SAS049 family protein	-
ABWV32_RS05960 (SKB0123_11720)	-	1192613..1193608 (-)	996	WP_002453387.1	LLM class flavin-dependent oxidoreductase	-
ABWV32_RS05965 (SKB0123_11730)	-	1193869..1195011 (+)	1143	WP_353305060.1	cysteine desulfurase family protein	-
ABWV32_RS05970 (SKB0123_11740)	mnmA	1195011..1196129 (+)	1119	WP_002436098.1	tRNA 2-thiouridine(34) synthase MnmA	-
ABWV32_RS05975 (SKB0123_11750)	-	1196232..1196900 (+)	669	WP_016898208.1	tetratricopeptide repeat protein	-
ABWV32_RS05980 (SKB0123_11760)	recD2	1196902..1199352 (+)	2451	WP_353305061.1	ATP-dependent RecD-like DNA helicase	Machinery gene
ABWV32_RS05985 (SKB0123_11770)	alaS	1199692..1202322 (+)	2631	WP_002453382.1	alanine--tRNA ligase	-
ABWV32_RS05990 (SKB0123_11780)	-	1202386..1202646 (+)	261	WP_002453381.1	IreB family regulatory phosphoprotein	-
ABWV32_RS05995 (SKB0123_11790)	ruvX	1202648..1203076 (+)	429	WP_002435990.1	Holliday junction resolvase RuvX	-
ABWV32_RS06000 (SKB0123_11800)	-	1203090..1203410 (+)	321	WP_002436074.1	DUF1292 domain-containing protein	-

Sequence

Protein

• Length: 816 a.a.
• Molecular weight: 91837.23 Da
• Isoelectric Point: 4.6342

>NTDB_id=109679 ABWV32_RS05980 WP_353305061.1 1196902..1199352(+) (recD2) [Staphylococcus capitis strain NBRC 115779]
MSDPTLFDKSMIKGTVDAILFQNNDNFYTVLKVDTIETNESFDSLPTVVGFLPNVVEGDVYTFKGQIVEHPRYGKQLKAE
TFEKELPQTKDAIISYLSSDLFKGIGKKTAQNIVNALGENAINDILNNPEVLEKVPSLPKKKQKQIAEQISSNQESEKIM
IRLHDLGFGPKLSMAIYQFYMGDTLKILDENPYQLVYDIKGIGFNKADQLARNIGIVADSEERLKAGLLYTLEEECIKQG
HTYLPNSYVIESTQTMLNDSSEVVISTKMLEQKIEQLSEEKKLIQSEEQVSIPSLYYSELKSVQNLYRIQTNNKKLKEIE
QSDLQMHIGEIESLNQVNYATSQKEALETAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYNEDDYPVVLA
APTGRASKRLQESTGLEAMTIHRLIGWNQETQPEDILDNEINARLIIIDEMSMVDTWLFHQFLSAVPLDAQIVFVGDEDQ
LPSVGPGQVFKDLIDSKRIPRVNLTEVYRQQDGSSIVDLAHRMKVGEPIDITQRFHDRSFINCTSDQIPDVVDKVVKSAV
SKGYNMSDIQVLAPMYKGNAGIKRLNQVLQSILNPKEKDSREIEFGDVVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFW
AKENALNKDVIVVDFEGNEITFTRQDLLELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKQSLVLL
GDPQAFDIGLKTKGQERLTQLNHLLKSYFGDDQEVIGSSGHSSVNSTEKHDTTQTEEESATTDAPQNDIVLSETTIFKID
PMINMGEMTPYDFAEH

Nucleotide

• Length: 2451 bp

>NTDB_id=109679 ABWV32_RS05980 WP_353305061.1 1196902..1199352(+) (recD2) [Staphylococcus capitis strain NBRC 115779]
ATGTCTGACCCTACACTTTTTGATAAATCAATGATCAAAGGTACTGTAGATGCTATATTATTTCAAAATAATGATAATTT
CTATACAGTTCTTAAAGTAGACACGATTGAAACGAATGAGTCCTTTGATAGCTTGCCAACTGTTGTAGGGTTTCTTCCAA
ATGTAGTTGAAGGAGACGTTTATACGTTTAAAGGGCAAATTGTCGAACACCCACGTTATGGTAAACAATTAAAAGCTGAA
ACTTTTGAAAAGGAACTTCCACAAACCAAAGATGCAATTATTAGTTATTTATCTAGTGATTTATTTAAAGGAATAGGAAA
GAAAACTGCTCAAAATATTGTTAATGCATTAGGCGAGAATGCAATCAATGATATATTAAATAATCCTGAAGTGTTAGAAA
AAGTCCCTAGTTTACCTAAGAAAAAGCAAAAGCAGATTGCAGAACAAATAAGTTCGAATCAAGAATCAGAAAAAATAATG
ATTCGGTTACATGATTTAGGATTTGGTCCTAAACTTTCAATGGCAATTTATCAGTTTTATATGGGAGATACATTGAAAAT
ACTAGACGAAAATCCTTATCAACTCGTTTATGATATTAAAGGAATAGGTTTTAATAAAGCTGATCAATTAGCGCGAAACA
TTGGTATTGTAGCAGATTCTGAAGAGCGTTTGAAAGCAGGATTGCTTTATACACTTGAAGAAGAATGTATCAAACAAGGA
CATACATATTTGCCTAATTCATATGTGATTGAATCAACGCAAACTATGCTTAACGATAGCTCTGAAGTTGTTATTTCTAC
TAAAATGCTAGAGCAAAAGATTGAGCAACTCTCTGAAGAGAAAAAATTGATTCAAAGCGAAGAACAAGTTTCAATTCCAA
GTTTGTATTATTCGGAATTAAAGAGTGTTCAAAATCTTTATCGGATTCAAACTAATAATAAAAAGTTAAAAGAAATCGAA
CAATCAGATTTACAAATGCATATTGGTGAAATTGAGTCACTAAATCAAGTAAATTATGCAACTTCACAGAAAGAAGCATT
AGAGACGGCAATCAATTCAAAAGTGATGCTTCTTACAGGTGGTCCCGGTACTGGTAAAACTACTGTCATTAAAGGCATCG
TAGAGCTTTATGCGGAAATACATGGATTATCATTGGATTATGATGATTACAACGAGGATGATTATCCAGTTGTACTTGCT
GCACCAACTGGACGCGCATCTAAAAGACTTCAGGAATCTACTGGATTAGAAGCAATGACAATTCACCGTTTAATAGGTTG
GAATCAAGAAACACAACCTGAAGATATTTTAGATAATGAAATTAATGCACGGCTTATCATTATAGATGAAATGTCTATGG
TAGATACATGGTTATTTCATCAATTTTTAAGTGCTGTTCCATTAGATGCTCAAATTGTATTTGTAGGAGATGAAGACCAA
CTCCCTTCAGTTGGACCGGGTCAAGTGTTTAAAGACCTCATTGATTCTAAAAGAATTCCGCGTGTTAATCTTACGGAAGT
GTATCGCCAACAAGATGGCTCAAGTATTGTTGATTTAGCACATCGTATGAAAGTAGGCGAACCCATAGATATAACTCAAC
GTTTTCACGATCGCAGTTTCATTAACTGTACTTCAGACCAAATACCTGATGTAGTAGATAAAGTAGTTAAAAGTGCAGTG
AGTAAAGGGTATAATATGAGTGATATTCAAGTCCTTGCTCCTATGTATAAAGGTAATGCAGGAATAAAACGTCTCAATCA
AGTATTACAATCTATTTTAAATCCAAAGGAAAAAGATAGTCGTGAAATTGAATTCGGAGATGTTGTATTTCGTAAAGGAG
ATAAAGTACTTCAGTTGGTCAATAGACCTAATGACAATATATTTAATGGTGATATTGGTGTAATTGTAGGCATATTTTGG
GCTAAAGAAAATGCTCTTAATAAAGATGTAATAGTAGTAGATTTTGAAGGAAATGAAATTACCTTTACTCGACAAGATTT
ACTTGAACTTACTCATGCTTATTGTACATCTATTCATAAATCTCAAGGGTCAGAATTTCCAATTGTTATTATGCCTATAG
TTAAACAATACTTTCGTATGTTACAAAGACCTATCCTTTATACGGGTCTGACCCGTGCTAAGCAATCACTTGTTTTACTT
GGGGATCCCCAAGCATTTGATATAGGACTGAAGACAAAAGGCCAAGAACGTTTAACTCAGTTGAATCACTTATTAAAATC
TTATTTTGGTGATGATCAAGAAGTTATAGGTAGTTCAGGTCATTCATCTGTAAATAGCACTGAAAAACATGATACTACAC
AAACTGAAGAAGAGAGCGCAACAACTGACGCACCACAAAATGACATTGTTCTTAGTGAAACCACTATATTTAAAATTGAT
CCTATGATTAATATGGGAGAAATGACGCCTTACGATTTTGCCGAGCATTGA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-720)

• AAA domain (AAA_30) (339-545)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	49.14	99.755	0.49