Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   ACGHT2_RS03950 Genome accession   NZ_AP031455
Coordinates   725764..726630 (+) Length   288 a.a.
NCBI ID   WP_117567352.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain k46-0107-A9     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 720764..731630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHT2_RS03920 (K460107A9_06920) - 721043..721921 (+) 879 WP_003064089.1 F0F1 ATP synthase subunit gamma -
  ACGHT2_RS03925 (K460107A9_06930) atpD 721988..723394 (+) 1407 WP_003064092.1 F0F1 ATP synthase subunit beta -
  ACGHT2_RS03930 (K460107A9_06940) - 723407..723823 (+) 417 WP_003064095.1 F0F1 ATP synthase subunit epsilon -
  ACGHT2_RS03935 - 723885..724121 (+) 237 WP_003064099.1 DUF1146 family protein -
  ACGHT2_RS03940 (K460107A9_06950) murA 724184..725458 (+) 1275 WP_041974287.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACGHT2_RS03945 (K460107A9_06960) - 725461..725649 (+) 189 WP_003064103.1 DNA-directed RNA polymerase subunit beta -
  ACGHT2_RS03950 (K460107A9_06970) endA 725764..726630 (+) 867 WP_117567352.1 DNA/RNA non-specific endonuclease Machinery gene
  ACGHT2_RS03955 (K460107A9_06980) pheS 726917..727960 (+) 1044 WP_013642932.1 phenylalanine--tRNA ligase subunit alpha -
  ACGHT2_RS03960 - 727996..728488 (+) 493 Protein_713 GNAT family N-acetyltransferase -
  ACGHT2_RS03965 (K460107A9_07010) pheT 728559..730964 (+) 2406 WP_013851661.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 30880.02 Da        Isoelectric Point: 6.4945

>NTDB_id=109613 ACGHT2_RS03950 WP_117567352.1 725764..726630(+) (endA) [Streptococcus pasteurianus strain k46-0107-A9]
MAKKSKLSKQIKSLLSLVILLVGIGTGWVTISDSNDPLNQVVSLITGDSSSEITSNQSSSDSATPTQALAETVLTDSVKE
QLGTNIEWNGAGAYIINNNQTSLNAKVSSQPYANNKTKTVQGQTVPTVANALLSKSTRQYKSREETGNGSTSWKPAGWHQ
VQDLSGTYSHAVDRGHLLGYALVGGLKGFDASTSNPDNVATQTAWANEANSESSTGQNYYESLVRKALDQNKRVRYRVTL
IYDGDNLLASGTHLEAKSSDGSLEFNVFIPNVQSGLTFDYYSGQVSVN

Nucleotide


Download         Length: 867 bp        

>NTDB_id=109613 ACGHT2_RS03950 WP_117567352.1 725764..726630(+) (endA) [Streptococcus pasteurianus strain k46-0107-A9]
ATGGCAAAGAAATCAAAATTGTCTAAACAGATAAAATCCCTGCTGTCTTTGGTGATTTTGTTAGTTGGGATTGGTACTGG
TTGGGTGACGATATCAGATTCGAACGACCCGCTCAATCAAGTCGTTTCGTTAATTACTGGTGACTCCTCTTCTGAAATAA
CGTCAAATCAATCGAGTTCTGATTCAGCAACGCCAACACAAGCTTTGGCAGAGACGGTATTAACAGATAGTGTCAAAGAG
CAGTTAGGAACAAATATAGAATGGAATGGTGCGGGAGCCTATATTATCAATAATAATCAAACCTCCCTAAATGCAAAAGT
TTCAAGTCAACCTTACGCCAACAACAAAACGAAAACGGTGCAAGGTCAGACCGTTCCAACGGTTGCTAATGCTTTGCTAA
GTAAGTCAACTCGTCAATACAAAAGTCGTGAGGAGACTGGAAATGGCTCAACGTCTTGGAAGCCAGCTGGTTGGCATCAA
GTTCAAGACCTTTCAGGGACTTATAGCCATGCGGTAGATCGTGGTCATTTGCTTGGCTATGCTTTGGTTGGTGGTCTAAA
AGGCTTTGATGCGTCAACAAGCAATCCTGACAATGTGGCAACACAGACTGCCTGGGCAAACGAGGCAAATTCGGAAAGTT
CAACTGGTCAAAATTACTATGAATCCCTTGTCCGCAAAGCTCTTGACCAAAATAAACGAGTTCGTTACCGTGTTACCTTG
ATTTACGATGGAGACAATCTTTTAGCAAGTGGCACGCATTTGGAAGCCAAATCATCCGATGGTAGTCTAGAATTTAACGT
CTTTATTCCAAATGTGCAAAGCGGACTAACATTTGATTATTATTCAGGTCAAGTTAGTGTGAATTGA

Domains

Predicted by InterProScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(96-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

66.129

86.111

0.569
  endA Streptococcus pneumoniae D39

66.129

86.111

0.569
  endA Streptococcus pneumoniae R6

66.129

86.111

0.569
  endA Streptococcus pneumoniae TIGR4

66.129

86.111

0.569

Multiple sequence alignment