Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACMX77_RS08795 Genome accession   NZ_CP180438
Coordinates   1682637..1683416 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain W-2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1677637..1688416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMX77_RS08775 (ACMX77_08775) trmFO 1678330..1679637 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACMX77_RS08780 (ACMX77_08780) xerC 1679705..1680619 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  ACMX77_RS08785 (ACMX77_08785) clpQ 1680632..1681177 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  ACMX77_RS08790 (ACMX77_08790) hslU 1681194..1682597 (+) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  ACMX77_RS08795 (ACMX77_08795) codY 1682637..1683416 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACMX77_RS08800 (ACMX77_08800) flgB 1683796..1684185 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  ACMX77_RS08805 (ACMX77_08805) flgC 1684185..1684637 (+) 453 WP_014479779.1 flagellar basal body rod protein FlgC -
  ACMX77_RS08810 (ACMX77_08810) fliE 1684648..1684968 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  ACMX77_RS08815 (ACMX77_08815) fliF 1685014..1686624 (+) 1611 WP_015483223.1 flagellar basal-body MS-ring/collar protein FliF -
  ACMX77_RS08820 (ACMX77_08820) fliG 1686637..1687653 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  ACMX77_RS08825 (ACMX77_08825) fliH 1687646..1688398 (+) 753 WP_024572494.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=1095792 ACMX77_RS08795 WP_003220850.1 1682637..1683416(+) (codY) [Bacillus subtilis strain W-2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1095792 ACMX77_RS08795 WP_003220850.1 1682637..1683416(+) (codY) [Bacillus subtilis strain W-2]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTCATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTTCCTGTTGAGAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAACTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATCGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment