Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACGHCT_RS08075 Genome accession   NZ_AP031453
Coordinates   1742288..1744123 (+) Length   611 a.a.
NCBI ID   WP_390439380.1    Uniprot ID   -
Organism   Lactonifactor longoviformis strain k42-0107-F6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1737288..1749123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHCT_RS08060 (K420107F6_16200) - 1738090..1739469 (+) 1380 WP_072848223.1 MATE family efflux transporter -
  ACGHCT_RS08065 (K420107F6_16210) - 1739643..1740125 (+) 483 WP_072848221.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACGHCT_RS08070 (K420107F6_16220) - 1740130..1742295 (+) 2166 WP_390439378.1 ABC transporter ATP-binding protein -
  ACGHCT_RS08075 (K420107F6_16230) rcrQ 1742288..1744123 (+) 1836 WP_390439380.1 ABC transporter ATP-binding protein Regulator
  ACGHCT_RS08080 (K420107F6_16240) - 1744275..1744895 (+) 621 WP_226902863.1 uracil-DNA glycosylase family protein -
  ACGHCT_RS08085 (K420107F6_16250) - 1744942..1746144 (-) 1203 WP_390439383.1 LysM peptidoglycan-binding domain-containing protein -
  ACGHCT_RS08090 (K420107F6_16260) - 1746215..1746868 (+) 654 WP_390439385.1 pentapeptide repeat-containing protein -
  ACGHCT_RS08095 (K420107F6_16270) - 1746870..1748123 (-) 1254 WP_072848215.1 DUF6076 domain-containing protein -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 68434.92 Da        Isoelectric Point: 5.6924

>NTDB_id=109571 ACGHCT_RS08075 WP_390439380.1 1742288..1744123(+) (rcrQ) [Lactonifactor longoviformis strain k42-0107-F6]
MSNPRRGPMGGHGKMVPGEKAKDFKGTMKKLMNYMKRYKIRIFIMLVFAVGGTIFNIVGPKILGKATTELMNGLMGKING
TGSIDFSKIGTILATVLCLYAVSSVFSFVQGYVMSGISNDVTYCLRKEISQKINRIPMKYFESRTHGEILSRVTNDVDTL
QMSLNQSITQLITSVTTLLGALIMMLSINIWMTCAALLILPVSMMIIGKVMKHSQKYFQAQQRYLGEVNGQVEEIYSGQN
VVKVFNKEDAVVDEFEKTNDKLYDSAWKSQFFSGMMMPIMQFVGNLGYVMVALLGGFLTIKGSIEVGDVQAFFQYIRNFT
QPVQQIAQVTNMLQSSAAASERVFEFLEEEEEDQTVDQPADIADVEGNVEFDHVSFGYHPEQIIIHDFSADIKSGQKVAI
VGPTGAGKTTMVKLLMRFYDVNTGEIKVDGHNIKDFNRSELRELFGMVLQDTWLFNGTILENIRYGRLDATDEEVIEAAK
AAHAHRFIMAQPDGYQTILDEETSNISQGQKQLLTIARTILADNKILILDEATSSVDTRTEVRIQKAMDNLMRGRTSFII
AHRLSTIRDADLILVMRDGDIIEQGTHEELLAKGGFYENLYNSQFEKAEAV

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=109571 ACGHCT_RS08075 WP_390439380.1 1742288..1744123(+) (rcrQ) [Lactonifactor longoviformis strain k42-0107-F6]
ATGAGTAATCCAAGAAGAGGCCCCATGGGGGGACACGGCAAAATGGTGCCGGGAGAAAAGGCAAAGGACTTTAAAGGCAC
CATGAAGAAACTGATGAATTATATGAAGCGCTATAAAATCCGTATCTTTATTATGCTGGTATTTGCGGTGGGCGGAACTA
TTTTTAATATAGTGGGACCTAAGATTCTGGGTAAAGCCACAACGGAACTGATGAACGGCCTGATGGGAAAAATCAACGGG
ACCGGATCCATTGATTTCAGCAAAATAGGAACCATACTGGCCACAGTACTCTGTCTGTATGCGGTGAGTTCTGTCTTCTC
TTTTGTACAGGGCTATGTCATGTCAGGGATATCCAACGATGTCACGTACTGCCTTCGAAAAGAGATCTCTCAGAAGATTA
ACCGGATCCCTATGAAATACTTTGAAAGCCGTACCCACGGAGAGATTCTATCCAGGGTAACTAATGATGTAGATACACTG
CAGATGAGCCTCAACCAGAGTATTACCCAGCTTATTACTTCAGTGACTACTCTGCTGGGCGCGCTGATTATGATGCTTAG
CATTAATATCTGGATGACTTGTGCAGCCCTGCTGATTCTGCCGGTGTCTATGATGATTATAGGAAAAGTGATGAAGCATT
CACAAAAATATTTCCAGGCGCAGCAGAGATATCTGGGAGAAGTAAACGGTCAGGTAGAGGAGATCTACAGCGGCCAAAAT
GTGGTGAAGGTATTTAACAAAGAAGATGCTGTGGTAGATGAATTTGAAAAGACAAATGATAAACTGTATGACTCAGCGTG
GAAATCCCAGTTTTTCTCCGGAATGATGATGCCTATTATGCAGTTTGTTGGTAATCTGGGGTATGTTATGGTCGCCCTTT
TGGGAGGTTTTCTTACCATCAAGGGAAGTATTGAAGTAGGAGATGTGCAGGCATTCTTCCAGTATATCAGAAACTTTACG
CAGCCTGTACAGCAGATTGCACAGGTAACCAATATGCTTCAGTCATCTGCAGCGGCGTCGGAACGTGTCTTCGAATTTCT
GGAGGAAGAGGAGGAAGACCAGACAGTAGATCAGCCTGCAGATATTGCAGATGTTGAGGGAAATGTTGAATTTGATCACG
TATCCTTCGGCTATCATCCGGAGCAAATCATTATACACGACTTCTCTGCAGATATAAAATCAGGCCAGAAGGTGGCAATT
GTGGGTCCTACCGGGGCCGGAAAAACCACTATGGTAAAACTTCTTATGCGTTTTTATGACGTGAATACGGGTGAGATTAA
GGTTGACGGCCACAACATCAAGGACTTCAACAGAAGTGAGCTGAGAGAGCTTTTTGGCATGGTTCTTCAGGATACTTGGC
TTTTCAACGGAACCATACTGGAGAACATCCGATACGGACGCCTGGATGCTACCGATGAAGAAGTAATAGAAGCTGCAAAA
GCGGCACATGCACACAGATTTATCATGGCCCAGCCAGATGGCTATCAGACCATTCTGGATGAGGAAACCAGTAATATTTC
TCAGGGGCAGAAGCAGCTGTTGACCATCGCGAGAACAATCCTTGCGGACAATAAGATATTGATCCTAGACGAGGCCACAT
CATCTGTAGATACCCGCACAGAGGTGAGAATTCAAAAGGCCATGGATAATCTCATGCGGGGAAGAACCAGCTTTATAATC
GCCCACAGGCTCTCGACCATCCGTGACGCAGATTTGATTCTGGTCATGAGGGACGGAGATATCATCGAACAGGGAACACA
TGAGGAATTGCTGGCGAAGGGCGGATTTTATGAAAATCTCTACAACAGCCAGTTTGAAAAGGCGGAGGCGGTATAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(42-323)

ABC transporter (ABC_tran)

(386-534)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.512

95.908

0.484

Multiple sequence alignment