Detailed information NTG1095511

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACMX2G_RS17085
• Genome accession: NZ_CP180375
• Coordinates: 3386454..3387233 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain NJN-6
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 3381454..3392233

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMX2G_RS17065 (ACMX2G_17065)	trmFO	3382141..3383448 (+)	1308	WP_003154273.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACMX2G_RS17070 (ACMX2G_17070)	xerC	3383518..3384435 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
ACMX2G_RS17075 (ACMX2G_17075)	hslV	3384451..3384996 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
ACMX2G_RS17080 (ACMX2G_17080)	hslU	3385013..3386416 (+)	1404	WP_024085299.1	HslU--HslV peptidase ATPase subunit	-
ACMX2G_RS17085 (ACMX2G_17085)	codY	3386454..3387233 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACMX2G_RS17090 (ACMX2G_17090)	flgB	3387587..3387976 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ACMX2G_RS17095 (ACMX2G_17095)	flgC	3387976..3388428 (+)	453	WP_003154259.1	flagellar basal body rod protein FlgC	-
ACMX2G_RS17100 (ACMX2G_17100)	fliE	3388439..3388759 (+)	321	WP_003154258.1	flagellar hook-basal body complex protein FliE	-
ACMX2G_RS17105 (ACMX2G_17105)	fliF	3388802..3390412 (+)	1611	WP_003154257.1	flagellar basal-body MS-ring/collar protein FliF	-
ACMX2G_RS17110 (ACMX2G_17110)	fliG	3390425..3391441 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACMX2G_RS17115 (ACMX2G_17115)	fliH	3391434..3392189 (+)	756	WP_003154255.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1095511 ACMX2G_RS17085 WP_003154263.1 3386454..3387233(+) (codY) [Bacillus velezensis strain NJN-6]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1095511 ACMX2G_RS17085 WP_003154263.1 3386454..3387233(+) (codY) [Bacillus velezensis strain NJN-6]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAAATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471