Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   HW05_RS20600 Genome accession   NZ_CP008861
Coordinates   4474350..4474874 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain H47921     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4469350..4479874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW05_RS20580 (HW05_20720) - 4469417..4471888 (-) 2472 WP_003095841.1 penicillin-binding protein 1A -
  HW05_RS20585 (HW05_20725) pilM 4472073..4473137 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  HW05_RS20590 (HW05_20730) pilN 4473137..4473733 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  HW05_RS20595 (HW05_20735) pilO 4473730..4474353 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  HW05_RS20600 (HW05_20740) comL/pilP 4474350..4474874 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  HW05_RS20605 (HW05_20745) pilQ 4474928..4477072 (+) 2145 WP_003103267.1 type 4a pilus secretin PilQ Machinery gene
  HW05_RS20610 (HW05_20750) aroK 4477084..4477602 (+) 519 WP_003095833.1 shikimate kinase AroK -
  HW05_RS20615 (HW05_20755) aroB 4477652..4478758 (+) 1107 WP_019726985.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=109547 HW05_RS20600 WP_003095836.1 4474350..4474874(+) (comL/pilP) [Pseudomonas aeruginosa strain H47921]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=109547 HW05_RS20600 WP_003095836.1 4474350..4474874(+) (comL/pilP) [Pseudomonas aeruginosa strain H47921]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment