Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACLBK2_RS19140 Genome accession   NZ_CP180236
Coordinates   3702492..3703271 (-) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus sp. Ba 3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3697492..3708271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLBK2_RS19115 (ACLBK2_19115) uppS 3698238..3699014 (-) 777 WP_048530497.1 isoprenyl transferase -
  ACLBK2_RS19120 (ACLBK2_19120) frr 3699100..3699657 (-) 558 WP_000531501.1 ribosome recycling factor -
  ACLBK2_RS19125 (ACLBK2_19125) pyrH 3699660..3700382 (-) 723 WP_000042663.1 UMP kinase -
  ACLBK2_RS19130 (ACLBK2_19130) tsf 3700449..3701336 (-) 888 WP_002194822.1 translation elongation factor Ts -
  ACLBK2_RS19135 (ACLBK2_19135) rpsB 3701440..3702141 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  ACLBK2_RS19140 (ACLBK2_19140) codY 3702492..3703271 (-) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACLBK2_RS19145 (ACLBK2_19145) hslU 3703349..3704740 (-) 1392 WP_048530499.1 ATP-dependent protease ATPase subunit HslU -
  ACLBK2_RS19150 (ACLBK2_19150) hslV 3704763..3705305 (-) 543 WP_000526271.1 ATP-dependent protease proteolytic subunit HslV -
  ACLBK2_RS19155 (ACLBK2_19155) xerC 3705349..3706248 (-) 900 WP_029439591.1 tyrosine recombinase XerC -
  ACLBK2_RS19160 (ACLBK2_19160) trmFO 3706314..3707618 (-) 1305 WP_071716250.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=1094851 ACLBK2_RS19140 WP_000421288.1 3702492..3703271(-) (codY) [Bacillus sp. Ba 3]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1094851 ACLBK2_RS19140 WP_000421288.1 3702492..3703271(-) (codY) [Bacillus sp. Ba 3]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGCACACTAGTGTTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCGGAA
GAAATCGAAGAAGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATCGCTGACCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTTCGTAAATTAGAGAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACACGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment