Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | ACLBK2_RS19140 | Genome accession | NZ_CP180236 |
| Coordinates | 3702492..3703271 (-) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus sp. Ba 3 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3666654..3719679 | 3702492..3703271 | within | 0 |
Gene organization within MGE regions
Location: 3666654..3719679
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLBK2_RS18980 (ACLBK2_18980) | - | 3667540..3667743 (-) | 204 | WP_048530469.1 | YlzJ-like family protein | - |
| ACLBK2_RS18985 (ACLBK2_18985) | tepA | 3667740..3668489 (-) | 750 | WP_048530471.1 | translocation-enhancing protein TepA | - |
| ACLBK2_RS18990 (ACLBK2_18990) | - | 3668592..3670262 (-) | 1671 | WP_000823086.1 | ribonuclease J | - |
| ACLBK2_RS18995 (ACLBK2_18995) | dapA | 3670949..3671827 (-) | 879 | WP_048530473.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| ACLBK2_RS19000 (ACLBK2_19000) | dapG | 3671839..3673071 (-) | 1233 | WP_048530475.1 | aspartate kinase | - |
| ACLBK2_RS19005 (ACLBK2_19005) | asd | 3673095..3674141 (-) | 1047 | WP_000414848.1 | aspartate-semialdehyde dehydrogenase | - |
| ACLBK2_RS19010 (ACLBK2_19010) | dpaB | 3674292..3674891 (-) | 600 | WP_001049480.1 | dipicolinate synthase subunit B | - |
| ACLBK2_RS19015 (ACLBK2_19015) | dpaA | 3674888..3675790 (-) | 903 | WP_071758792.1 | dipicolinic acid synthetase subunit A | - |
| ACLBK2_RS19020 (ACLBK2_19020) | - | 3676065..3676316 (-) | 252 | WP_001239747.1 | YlmC/YmxH family sporulation protein | - |
| ACLBK2_RS19025 (ACLBK2_19025) | - | 3676443..3677684 (-) | 1242 | WP_071758790.1 | M16 family metallopeptidase | - |
| ACLBK2_RS19030 (ACLBK2_19030) | - | 3677771..3678670 (-) | 900 | WP_071758789.1 | polysaccharide deacetylase family protein | - |
| ACLBK2_RS19035 (ACLBK2_19035) | pnp | 3678822..3680960 (-) | 2139 | WP_048530482.1 | polyribonucleotide nucleotidyltransferase | - |
| ACLBK2_RS19040 (ACLBK2_19040) | rpsO | 3681121..3681390 (-) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| ACLBK2_RS19045 (ACLBK2_19045) | ribF | 3681491..3682462 (-) | 972 | WP_247998490.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| ACLBK2_RS19050 (ACLBK2_19050) | truB | 3682506..3683429 (-) | 924 | WP_247998491.1 | tRNA pseudouridine(55) synthase TruB | - |
| ACLBK2_RS19055 (ACLBK2_19055) | rbfA | 3683516..3683872 (-) | 357 | WP_000776444.1 | 30S ribosome-binding factor RbfA | - |
| ACLBK2_RS19060 (ACLBK2_19060) | - | 3683888..3684169 (-) | 282 | WP_071758788.1 | DUF503 domain-containing protein | - |
| ACLBK2_RS19065 (ACLBK2_19065) | infB | 3684166..3686226 (-) | 2061 | WP_048530488.1 | translation initiation factor IF-2 | - |
| ACLBK2_RS19070 (ACLBK2_19070) | - | 3686231..3686542 (-) | 312 | WP_001286518.1 | YlxQ family RNA-binding protein | - |
| ACLBK2_RS19075 (ACLBK2_19075) | rnpM | 3686543..3686815 (-) | 273 | WP_000071128.1 | RNase P modulator RnpM | - |
| ACLBK2_RS19080 (ACLBK2_19080) | nusA | 3686827..3687933 (-) | 1107 | WP_000102596.1 | transcription termination factor NusA | - |
| ACLBK2_RS19085 (ACLBK2_19085) | rimP | 3687951..3688421 (-) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| ACLBK2_RS19090 (ACLBK2_19090) | - | 3688754..3693055 (-) | 4302 | WP_071758787.1 | PolC-type DNA polymerase III | - |
| ACLBK2_RS19095 (ACLBK2_19095) | - | 3693180..3694880 (-) | 1701 | WP_247998492.1 | proline--tRNA ligase | - |
| ACLBK2_RS19100 (ACLBK2_19100) | rseP | 3694990..3696246 (-) | 1257 | WP_166688118.1 | RIP metalloprotease RseP | - |
| ACLBK2_RS19105 (ACLBK2_19105) | dxr | 3696263..3697405 (-) | 1143 | WP_016086609.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| ACLBK2_RS19110 (ACLBK2_19110) | cdsA | 3697429..3698220 (-) | 792 | WP_071758785.1 | phosphatidate cytidylyltransferase | - |
| ACLBK2_RS19115 (ACLBK2_19115) | uppS | 3698238..3699014 (-) | 777 | WP_048530497.1 | isoprenyl transferase | - |
| ACLBK2_RS19120 (ACLBK2_19120) | frr | 3699100..3699657 (-) | 558 | WP_000531501.1 | ribosome recycling factor | - |
| ACLBK2_RS19125 (ACLBK2_19125) | pyrH | 3699660..3700382 (-) | 723 | WP_000042663.1 | UMP kinase | - |
| ACLBK2_RS19130 (ACLBK2_19130) | tsf | 3700449..3701336 (-) | 888 | WP_002194822.1 | translation elongation factor Ts | - |
| ACLBK2_RS19135 (ACLBK2_19135) | rpsB | 3701440..3702141 (-) | 702 | WP_000111485.1 | 30S ribosomal protein S2 | - |
| ACLBK2_RS19140 (ACLBK2_19140) | codY | 3702492..3703271 (-) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| ACLBK2_RS19145 (ACLBK2_19145) | hslU | 3703349..3704740 (-) | 1392 | WP_048530499.1 | ATP-dependent protease ATPase subunit HslU | - |
| ACLBK2_RS19150 (ACLBK2_19150) | hslV | 3704763..3705305 (-) | 543 | WP_000526271.1 | ATP-dependent protease proteolytic subunit HslV | - |
| ACLBK2_RS19155 (ACLBK2_19155) | xerC | 3705349..3706248 (-) | 900 | WP_029439591.1 | tyrosine recombinase XerC | - |
| ACLBK2_RS19160 (ACLBK2_19160) | trmFO | 3706314..3707618 (-) | 1305 | WP_071716250.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| ACLBK2_RS19165 (ACLBK2_19165) | topA | 3707669..3709747 (-) | 2079 | WP_071758783.1 | type I DNA topoisomerase | - |
| ACLBK2_RS19170 (ACLBK2_19170) | dprA | 3709892..3710761 (-) | 870 | WP_048530504.1 | DNA-processing protein DprA | - |
| ACLBK2_RS19175 (ACLBK2_19175) | sucD | 3710849..3711751 (-) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| ACLBK2_RS19180 (ACLBK2_19180) | sucC | 3711771..3712931 (-) | 1161 | WP_016086604.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| ACLBK2_RS19185 (ACLBK2_19185) | rnhB | 3713125..3713898 (-) | 774 | WP_048530506.1 | ribonuclease HII | - |
| ACLBK2_RS19190 (ACLBK2_19190) | ylqF | 3713950..3714840 (-) | 891 | WP_016135245.1 | ribosome biogenesis GTPase YlqF | - |
| ACLBK2_RS19195 (ACLBK2_19195) | lepB | 3714861..3715412 (-) | 552 | WP_048530509.1 | signal peptidase I | - |
| ACLBK2_RS19200 (ACLBK2_19200) | rplS | 3715516..3715860 (-) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| ACLBK2_RS19205 (ACLBK2_19205) | trmD | 3716007..3716741 (-) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| ACLBK2_RS19210 (ACLBK2_19210) | rimM | 3716741..3717256 (-) | 516 | WP_166688116.1 | ribosome maturation factor RimM | - |
| ACLBK2_RS19215 (ACLBK2_19215) | - | 3717377..3717604 (-) | 228 | WP_087958605.1 | KH domain-containing protein | - |
| ACLBK2_RS19220 (ACLBK2_19220) | rpsP | 3717619..3717891 (-) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| ACLBK2_RS19225 (ACLBK2_19225) | ffh | 3717992..3719341 (-) | 1350 | WP_000863461.1 | signal recognition particle protein | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=1094851 ACLBK2_RS19140 WP_000421288.1 3702492..3703271(-) (codY) [Bacillus sp. Ba 3]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=1094851 ACLBK2_RS19140 WP_000421288.1 3702492..3703271(-) (codY) [Bacillus sp. Ba 3]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGCACACTAGTGTTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCGGAA
GAAATCGAAGAAGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATCGCTGACCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTTCGTAAATTAGAGAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACACGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGCACACTAGTGTTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCGGAA
GAAATCGAAGAAGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATCGCTGACCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTTCGTAAATTAGAGAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACACGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |