Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ACLBKY_RS12425 Genome accession   NZ_CP180233
Coordinates   2418478..2420811 (-) Length   777 a.a.
NCBI ID   WP_407974443.1    Uniprot ID   -
Organism   Bacillus altitudinis strain Ba 5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2413478..2425811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLBKY_RS12410 (ACLBKY_12410) dtd 2415127..2415570 (-) 444 WP_249669263.1 D-aminoacyl-tRNA deacylase -
  ACLBKY_RS12415 (ACLBKY_12415) - 2415589..2417799 (-) 2211 WP_008342726.1 RelA/SpoT family protein -
  ACLBKY_RS12420 (ACLBKY_12420) - 2417942..2418454 (-) 513 WP_008342729.1 adenine phosphoribosyltransferase -
  ACLBKY_RS12425 (ACLBKY_12425) recJ 2418478..2420811 (-) 2334 WP_407974443.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ACLBKY_RS12430 (ACLBKY_12430) - 2420893..2421249 (-) 357 WP_017367707.1 lipopolysaccharide assembly LapA domain-containing protein -
  ACLBKY_RS12435 (ACLBKY_12435) - 2421349..2421837 (-) 489 WP_008342734.1 cation:proton antiporter regulatory subunit -
  ACLBKY_RS12440 (ACLBKY_12440) secDF 2422038..2424266 (-) 2229 WP_048001809.1 protein translocase subunit SecDF -
  ACLBKY_RS12445 (ACLBKY_12445) - 2424308..2424604 (-) 297 WP_003216788.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 777 a.a.        Molecular weight: 87684.43 Da        Isoelectric Point: 4.8328

>NTDB_id=1094750 ACLBKY_RS12425 WP_407974443.1 2418478..2420811(-) (recJ) [Bacillus altitudinis strain Ba 5]
MLLSKMRWEYEHPSEEKVKSLSENLNISALTASLLVQRGLEEVEEARSFLFDQKAEFHDPFLLKGMKEAVERINKAIEEQ
ESIVIFGDYDADGVTSTSVLLHTLKERSAKVDFYIPDRFKEGYGPNEQAFRYIKEQGASLVITVDTGIAAVNEARIAKEI
GLDLIITDHHEPSEELPEALAIVHPKQPGCEYPFKELAGVGVAFKVAHALLGKLPVELLDLAAIGTIADLVPLHDENRWL
AKKGLMQLRQSRRLGLKALLKEAGATLEEANEETVGFQIAPRLNAVGRIEQADPAVHLLMTEDMDEAEELARFVQELNKE
RQKIVSTITEEAIQMVEETGADQSAIVVAKAGWNPGVVGIVASKLTDTFSRPAIVLGIDEETQMAKGSARSIPGFDLFFH
LSKCRDILPHFGGHPMAAGMTLQADDVPLLRERLNQYANETLTEEDFIPIQRVDAVCKVDEMTVQAIEEVGLLSPFGMQN
PKPFIMIEDAQLEDIRTIGANQNHIKMSLKDEDKLLDCVGFHQGKLKEELVPGSQISVVGEVSINEWNNRKKPQLMLKDA
RVDEWQLFDLRGKKDWEKKVSTLDPAKTMVFCFDEETKRQSELVDIPIHHIDAENVSTFDVQEKYVIFADVPADEHLLKL
LLENQQPARIYTVFQRKEDHFMSSFPSRDQFKWFYGFLFKRGSFPIKEQGMELAKHRGWTKDTIIFMTKVFFELGFVKIE
NGVLSIVRDAPKKDLTASSSYTAKQRLMELDQTLTYSSAKELKEWLNSMMSEVSPVL

Nucleotide


Download         Length: 2334 bp        

>NTDB_id=1094750 ACLBKY_RS12425 WP_407974443.1 2418478..2420811(-) (recJ) [Bacillus altitudinis strain Ba 5]
ATGTTATTATCCAAAATGCGTTGGGAATATGAACATCCTAGCGAAGAAAAAGTGAAATCACTCTCTGAAAATCTGAATAT
TTCAGCGCTGACTGCATCACTTCTTGTACAAAGAGGGCTCGAAGAAGTAGAAGAAGCGAGGTCTTTTTTATTTGATCAAA
AAGCCGAATTTCATGATCCATTCTTATTAAAAGGAATGAAAGAAGCAGTAGAGCGCATCAACAAAGCGATCGAAGAGCAG
GAATCGATTGTGATCTTCGGAGATTATGATGCAGATGGTGTGACAAGTACGTCTGTACTTTTACATACACTTAAAGAACG
ATCTGCGAAGGTAGACTTTTATATTCCAGATCGATTTAAAGAAGGATATGGGCCAAACGAACAGGCTTTCCGATATATCA
AAGAGCAAGGAGCATCGCTTGTTATCACCGTGGATACAGGGATCGCTGCTGTAAATGAAGCACGTATTGCAAAAGAAATA
GGATTAGACCTGATCATCACAGATCACCATGAACCAAGCGAGGAACTGCCTGAGGCACTTGCAATTGTACATCCTAAGCA
GCCTGGGTGTGAGTATCCGTTTAAAGAGCTGGCGGGTGTCGGTGTTGCGTTTAAAGTGGCACATGCACTCCTTGGTAAAC
TCCCAGTAGAATTATTAGATCTTGCTGCAATCGGCACAATTGCCGATCTTGTCCCGCTGCATGATGAAAATAGATGGCTT
GCAAAAAAAGGCCTGATGCAGCTTCGTCAATCTAGACGGCTTGGGTTAAAAGCGTTATTAAAAGAAGCAGGCGCCACTCT
TGAAGAAGCAAATGAGGAAACGGTCGGCTTTCAAATTGCGCCAAGGCTGAATGCTGTTGGACGAATTGAGCAGGCAGATC
CGGCTGTTCATCTTCTCATGACTGAGGATATGGATGAAGCAGAAGAACTCGCTCGTTTTGTACAAGAATTGAACAAAGAA
CGGCAGAAAATTGTGAGTACGATCACGGAAGAAGCCATTCAAATGGTTGAAGAGACAGGCGCTGACCAGTCTGCTATCGT
CGTAGCAAAAGCTGGCTGGAATCCAGGCGTTGTCGGCATTGTTGCCTCAAAATTGACGGATACATTTTCTCGTCCGGCGA
TTGTGCTTGGAATAGACGAAGAAACGCAGATGGCGAAAGGGTCAGCACGAAGTATTCCTGGCTTTGATTTATTTTTCCAT
TTGAGTAAGTGCCGTGACATCCTGCCGCATTTCGGTGGACACCCGATGGCAGCAGGAATGACACTTCAAGCGGATGATGT
TCCTTTACTTAGGGAAAGATTGAATCAATATGCAAATGAAACGTTGACTGAAGAAGATTTTATTCCAATTCAACGGGTCG
ATGCAGTATGTAAAGTGGACGAAATGACGGTGCAAGCCATTGAAGAAGTGGGACTGCTGTCCCCGTTTGGCATGCAGAAT
CCTAAGCCGTTCATTATGATTGAAGACGCCCAGCTTGAAGACATCCGAACGATCGGGGCCAATCAAAATCACATTAAAAT
GTCACTAAAAGACGAAGACAAGCTGCTCGACTGTGTCGGTTTTCACCAAGGCAAGCTAAAAGAAGAACTTGTCCCAGGGA
GTCAAATTTCTGTCGTTGGCGAGGTCTCGATTAATGAATGGAATAACCGAAAGAAACCTCAGCTCATGCTAAAAGACGCT
AGAGTCGATGAATGGCAGCTGTTTGATTTACGCGGGAAAAAAGATTGGGAAAAGAAAGTATCAACACTTGATCCAGCAAA
AACGATGGTCTTCTGTTTTGACGAAGAAACAAAAAGGCAATCGGAGCTGGTGGATATTCCGATTCACCATATTGATGCAG
AAAATGTATCCACGTTTGATGTGCAGGAAAAGTATGTGATCTTTGCCGATGTTCCTGCAGATGAACACTTGCTCAAGCTG
CTTTTAGAAAATCAACAACCAGCAAGAATTTATACGGTGTTTCAGCGGAAAGAAGATCACTTTATGTCCTCATTCCCGAG
CCGTGATCAATTCAAATGGTTCTATGGGTTCTTGTTCAAACGGGGAAGTTTTCCTATTAAAGAACAAGGCATGGAGCTTG
CCAAACATAGAGGTTGGACAAAAGATACAATCATTTTTATGACAAAGGTGTTTTTTGAACTCGGTTTTGTTAAAATAGAG
AATGGTGTGCTGTCAATAGTGCGTGATGCCCCTAAAAAAGATTTAACCGCATCATCGTCTTATACAGCAAAACAACGATT
GATGGAACTCGATCAAACACTAACATATTCCTCAGCCAAAGAGCTGAAGGAATGGCTGAATAGCATGATGAGCGAAGTCT
CACCTGTGCTTTGA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(314-437)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-766)

RecJ OB domain (RecJ_OB)

(453-559)

DHH family (DHH)

(83-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

67.31

100

0.673

Multiple sequence alignment