Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACLBKY_RS07895 Genome accession   NZ_CP180233
Coordinates   1546134..1546913 (+) Length   259 a.a.
NCBI ID   WP_041108981.1    Uniprot ID   -
Organism   Bacillus altitudinis strain Ba 5     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1541134..1551913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLBKY_RS07875 (ACLBKY_07875) trmFO 1541838..1543142 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACLBKY_RS07880 (ACLBKY_07880) xerC 1543205..1544122 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  ACLBKY_RS07885 (ACLBKY_07885) hslV 1544137..1544682 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  ACLBKY_RS07890 (ACLBKY_07890) hslU 1544699..1546099 (+) 1401 WP_282833608.1 HslU--HslV peptidase ATPase subunit -
  ACLBKY_RS07895 (ACLBKY_07895) codY 1546134..1546913 (+) 780 WP_041108981.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACLBKY_RS07900 (ACLBKY_07900) flgB 1547202..1547591 (+) 390 WP_198406498.1 flagellar basal body rod protein FlgB -
  ACLBKY_RS07905 (ACLBKY_07905) flgC 1547591..1548043 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  ACLBKY_RS07910 (ACLBKY_07910) fliE 1548055..1548372 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  ACLBKY_RS07915 (ACLBKY_07915) fliF 1548423..1550015 (+) 1593 WP_414835267.1 flagellar basal-body MS-ring/collar protein FliF -
  ACLBKY_RS07920 (ACLBKY_07920) fliG 1550027..1551043 (+) 1017 WP_017367244.1 flagellar motor switch protein FliG -
  ACLBKY_RS07925 (ACLBKY_07925) fliH 1551036..1551800 (+) 765 WP_048002828.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29003.26 Da        Isoelectric Point: 4.7176

>NTDB_id=1094737 ACLBKY_RS07895 WP_041108981.1 1546134..1546913(+) (codY) [Bacillus altitudinis strain Ba 5]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1094737 ACLBKY_RS07895 WP_041108981.1 1546134..1546913(+) (codY) [Bacillus altitudinis strain Ba 5]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCCGGTTTGACAACGATTGTGCCAATTATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCAATCAGTTCTCTTTCATATAGTGAGCTTGAGGCGAT
TGAGCATATCTTTGAAGAACTTGATGGCAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.638

98.069

0.467

Multiple sequence alignment