Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACLBKW_RS07935 Genome accession   NZ_CP180232
Coordinates   1567559..1568338 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain Ba     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1562559..1573338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLBKW_RS07915 (ACLBKW_07915) trmFO 1563265..1564568 (+) 1304 Protein_1508 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACLBKW_RS07920 (ACLBKW_07920) xerC 1564631..1565548 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  ACLBKW_RS07925 (ACLBKW_07925) hslV 1565563..1566108 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  ACLBKW_RS07930 (ACLBKW_07930) hslU 1566125..1567524 (+) 1400 Protein_1511 HslU--HslV peptidase ATPase subunit -
  ACLBKW_RS07935 (ACLBKW_07935) codY 1567559..1568338 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACLBKW_RS07940 (ACLBKW_07940) flgB 1568629..1569018 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  ACLBKW_RS07945 (ACLBKW_07945) flgC 1569018..1569470 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  ACLBKW_RS07950 (ACLBKW_07950) fliE 1569482..1569799 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  ACLBKW_RS07955 (ACLBKW_07955) fliF 1569850..1571442 (+) 1593 WP_210552433.1 flagellar basal-body MS-ring/collar protein FliF -
  ACLBKW_RS07960 (ACLBKW_07960) fliG 1571454..1572470 (+) 1017 WP_034281776.1 flagellar motor switch protein FliG -
  ACLBKW_RS07965 (ACLBKW_07965) fliH 1572463..1573227 (+) 765 WP_024720351.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=1094676 ACLBKW_RS07935 WP_007499612.1 1567559..1568338(+) (codY) [Bacillus altitudinis strain Ba]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1094676 ACLBKW_RS07935 WP_007499612.1 1567559..1568338(+) (codY) [Bacillus altitudinis strain Ba]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAGCCGGTTAATTTTAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCAATCAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment