Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACMVO4_RS00440 Genome accession   NZ_CP180205
Coordinates   92490..93191 (+) Length   233 a.a.
NCBI ID   WP_414931676.1    Uniprot ID   -
Organism   Vibrio europaeus strain EX1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 87490..98191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVO4_RS00425 (ACMVO4_00425) - 88628..90952 (+) 2325 WP_414931675.1 Tex family protein -
  ACMVO4_RS00430 (ACMVO4_00430) - 91044..91514 (-) 471 WP_069667730.1 ATP-dependent Lon protease -
  ACMVO4_RS00435 (ACMVO4_00435) bioH 91636..92430 (-) 795 WP_272282770.1 pimeloyl-ACP methyl ester esterase BioH -
  ACMVO4_RS00440 (ACMVO4_00440) comF 92490..93191 (+) 702 WP_414931676.1 phosphoribosyltransferase family protein Machinery gene
  ACMVO4_RS00445 (ACMVO4_00445) nfuA 93278..93865 (+) 588 WP_069667733.1 Fe-S biogenesis protein NfuA -
  ACMVO4_RS00450 (ACMVO4_00450) nudE 94037..94582 (+) 546 WP_171381654.1 ADP compounds hydrolase NudE -
  ACMVO4_RS00455 (ACMVO4_00455) cysQ 94644..95471 (+) 828 WP_069667735.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ACMVO4_RS00460 (ACMVO4_00460) recG 95720..97798 (-) 2079 WP_272275060.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26555.10 Da        Isoelectric Point: 8.7198

>NTDB_id=1094492 ACMVO4_RS00440 WP_414931676.1 92490..93191(+) (comF) [Vibrio europaeus strain EX1]
MLTQKVVKHIADLLPMHCEVCHLALTKPHPPSGICDHCSRYFAPIPRCQRCGLPTPFDIAECGECLKHPPKWQRLYCVAD
YQPPLAQYVHRLKYERQFWQARKLANLLAPRIEKPAQVITFVPLHWGRYLRRGFNQSELIACSLARQLNVPCQSLFKRVR
ATPQQQGLTKAERKRNLDRAFLLNGEIVADHIAIVDDVLTTGSTVQHLCELLLEAGVKSVDIYCICRTPEPAS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1094492 ACMVO4_RS00440 WP_414931676.1 92490..93191(+) (comF) [Vibrio europaeus strain EX1]
ATGTTAACTCAAAAGGTAGTGAAACACATCGCCGACCTGTTGCCGATGCATTGTGAGGTTTGCCATCTTGCGTTGACCAA
GCCTCATCCACCTAGTGGTATTTGCGATCATTGCTCGCGCTACTTCGCGCCTATTCCTCGTTGTCAGCGCTGCGGTTTGC
CCACTCCTTTTGATATAGCAGAGTGCGGAGAATGTCTTAAACATCCTCCTAAATGGCAGCGGCTCTATTGTGTTGCTGAC
TATCAACCGCCACTTGCGCAATATGTTCATCGACTTAAGTACGAACGGCAATTTTGGCAGGCGCGTAAACTCGCGAATCT
GCTCGCCCCCAGAATAGAAAAGCCCGCACAGGTCATCACGTTTGTGCCCCTGCATTGGGGGCGATATCTAAGGCGCGGAT
TTAATCAGAGCGAGTTGATAGCATGCTCACTGGCGCGGCAACTCAACGTACCGTGCCAGTCCCTGTTTAAAAGAGTGAGA
GCAACACCTCAGCAGCAAGGTTTAACTAAGGCAGAGCGAAAGCGAAATCTAGACCGTGCTTTCTTACTCAATGGAGAGAT
TGTTGCTGACCACATCGCGATTGTTGATGATGTTCTCACTACTGGAAGTACGGTGCAGCATTTATGCGAATTACTGCTTG
AAGCGGGGGTGAAAAGCGTTGATATTTACTGCATCTGCCGTACTCCTGAGCCAGCAAGTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.172

99.571

0.549
  comF Vibrio campbellii strain DS40M4

48.333

100

0.498

Multiple sequence alignment