Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   ACMHYC_RS10225 Genome accession   NZ_CP180027
Coordinates   2133484..2134098 (-) Length   204 a.a.
NCBI ID   WP_199948370.1    Uniprot ID   -
Organism   Acinetobacter courvalinii isolate 2024CK-01798     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2128484..2139098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMHYC_RS10195 (ACMHYC_10190) - 2128915..2129355 (-) 441 WP_005286233.1 SRPBCC family protein -
  ACMHYC_RS10200 (ACMHYC_10195) tadA 2129422..2129931 (-) 510 WP_199948366.1 tRNA adenosine(34) deaminase TadA -
  ACMHYC_RS10205 (ACMHYC_10200) - 2129938..2131062 (-) 1125 WP_171062204.1 enoyl-CoA hydratase/isomerase family protein -
  ACMHYC_RS10210 (ACMHYC_10205) ung 2131059..2131772 (-) 714 WP_005230812.1 uracil-DNA glycosylase -
  ACMHYC_RS10215 (ACMHYC_10210) - 2131816..2132412 (-) 597 WP_199948367.1 6-pyruvoyl trahydropterin synthase family protein -
  ACMHYC_RS10220 (ACMHYC_10215) gspK 2132520..2133479 (-) 960 WP_199948368.1 type II secretion system minor pseudopilin GspK -
  ACMHYC_RS10225 (ACMHYC_10220) xcpW 2133484..2134098 (-) 615 WP_199948370.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ACMHYC_RS10230 (ACMHYC_10225) xcpV 2134095..2134448 (-) 354 WP_227556463.1 type II secretion system protein Machinery gene
  ACMHYC_RS10235 (ACMHYC_10230) - 2134831..2135379 (-) 549 WP_005286249.1 Tfp pilus assembly protein FimT/FimU -
  ACMHYC_RS10240 (ACMHYC_10235) - 2135391..2135999 (-) 609 WP_005230824.1 TetR/AcrR family transcriptional regulator -
  ACMHYC_RS10245 (ACMHYC_10240) - 2136041..2136814 (-) 774 WP_414659174.1 TatD family hydrolase -
  ACMHYC_RS10250 (ACMHYC_10245) - 2136839..2137183 (-) 345 WP_005230829.1 PilZ domain-containing protein -
  ACMHYC_RS10255 (ACMHYC_10250) - 2137543..2137848 (-) 306 WP_005286255.1 hypothetical protein -
  ACMHYC_RS10260 (ACMHYC_10255) - 2138053..2139036 (-) 984 WP_199948514.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23346.84 Da        Isoelectric Point: 7.3104

>NTDB_id=1094094 ACMHYC_RS10225 WP_199948370.1 2133484..2134098(-) (xcpW) [Acinetobacter courvalinii isolate 2024CK-01798]
MKYTRAFTLVELLVAIAIFAVLSMLGWKVFDYLLKVKDRNAEHEMHLFALQDAYQQVLRDSLQMIPLTANDGRQLQAALV
LNDQHFAFSKAGVSDPLKQGLSPYERIEYRYDAAQKKVYRLKYSNLNIPNRVQPVSSTLLENVDQFKLTVLNPQELTQWP
ENSDPSNIAELKKLPRGIKIQLTVAGTDYEWVYSLLNNPDMGGQ

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1094094 ACMHYC_RS10225 WP_199948370.1 2133484..2134098(-) (xcpW) [Acinetobacter courvalinii isolate 2024CK-01798]
ATGAAATACACACGTGCATTTACCTTGGTCGAATTATTGGTTGCCATTGCAATCTTTGCAGTACTTTCGATGTTGGGCTG
GAAAGTTTTTGACTATCTATTAAAAGTCAAAGATCGCAATGCCGAACATGAAATGCATTTATTTGCCTTGCAGGACGCCT
ATCAGCAGGTGCTAAGAGACAGTCTGCAGATGATTCCTTTAACTGCCAATGATGGCCGACAGTTGCAGGCAGCGCTGGTG
TTGAATGATCAGCACTTTGCATTTAGCAAGGCAGGTGTTTCTGATCCATTGAAACAGGGTTTGTCTCCTTACGAGCGTAT
TGAATACCGCTATGATGCTGCCCAAAAGAAAGTCTATCGCCTGAAATATTCGAATTTGAATATTCCCAATCGTGTACAAC
CTGTTTCAAGTACTTTGCTGGAAAATGTCGACCAATTTAAGCTGACGGTATTGAACCCGCAAGAATTGACGCAATGGCCT
GAAAACAGTGACCCAAGTAATATCGCTGAATTGAAGAAATTACCCCGTGGTATCAAAATTCAGTTGACGGTTGCGGGGAC
CGATTATGAGTGGGTGTATAGTCTGTTAAACAATCCAGATATGGGCGGTCAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)

Type II secretion system (T2SS), protein J (T2SSJ)

(59-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

72.059

100

0.721

Multiple sequence alignment