Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACINK0_RS12015 Genome accession   NZ_CP179945
Coordinates   2360827..2361447 (+) Length   206 a.a.
NCBI ID   WP_414656842.1    Uniprot ID   -
Organism   Deinococcus sp. VB343     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2355827..2366447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACINK0_RS11985 (ACINK0_11985) - 2355959..2356420 (+) 462 WP_339096069.1 MarR family transcriptional regulator -
  ACINK0_RS11990 (ACINK0_11990) - 2356484..2356909 (+) 426 WP_339096068.1 DoxX family protein -
  ACINK0_RS11995 (ACINK0_11995) - 2357131..2357511 (+) 381 WP_339096067.1 hypothetical protein -
  ACINK0_RS12000 (ACINK0_12000) ychF 2357619..2358716 (+) 1098 WP_339096066.1 redox-regulated ATPase YchF -
  ACINK0_RS12005 (ACINK0_12005) - 2358918..2359994 (-) 1077 WP_414656840.1 N-acetylmuramoyl-L-alanine amidase family protein -
  ACINK0_RS12010 (ACINK0_12010) - 2360156..2360803 (+) 648 WP_414656841.1 hypothetical protein -
  ACINK0_RS12015 (ACINK0_12015) comF 2360827..2361447 (+) 621 WP_414656842.1 ComF family protein Machinery gene
  ACINK0_RS12020 (ACINK0_12020) - 2361532..2362086 (-) 555 WP_414656843.1 DUF1684 domain-containing protein -
  ACINK0_RS12025 (ACINK0_12025) - 2362083..2362286 (-) 204 WP_414656844.1 RNA-binding S4 domain-containing protein -
  ACINK0_RS12030 (ACINK0_12030) - 2362370..2363305 (+) 936 WP_414656845.1 quinate 5-dehydrogenase -
  ACINK0_RS12035 (ACINK0_12035) - 2363365..2364078 (-) 714 WP_339096059.1 histidine phosphatase family protein -
  ACINK0_RS12040 (ACINK0_12040) purM 2364075..2365139 (-) 1065 WP_339096058.1 phosphoribosylformylglycinamidine cyclo-ligase -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 21790.39 Da        Isoelectric Point: 10.4976

>NTDB_id=1094067 ACINK0_RS12015 WP_414656842.1 2360827..2361447(+) (comF) [Deinococcus sp. VB343]
MFDWLRSLLPRSCPGCGGQLGAERGLCAACCTGLRVRVESHSPLVARPLPHLVTLGRYQGAVRRAVRALKYGGAREVALP
LGQALAAGVPAQWGVVGVVPVPLHRTRQRQRGYNQAELLARTIAAELGVPCLPLLERTRATAQQAKLHASERTSNLAGAF
AVRGELPAGTLLLVDDVMTTASTLSACREALTAAGVQELKYAAVAR

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1094067 ACINK0_RS12015 WP_414656842.1 2360827..2361447(+) (comF) [Deinococcus sp. VB343]
ATGTTCGACTGGCTGCGCTCGTTGCTGCCGCGCTCCTGTCCGGGGTGCGGCGGTCAACTGGGGGCTGAGCGGGGCTTGTG
TGCCGCCTGTTGCACTGGTCTACGGGTCAGGGTGGAGTCGCATTCGCCGCTGGTCGCCCGTCCGCTGCCGCATCTGGTCA
CGCTGGGGCGCTACCAGGGCGCGGTGCGGCGGGCAGTGCGGGCGCTGAAATACGGTGGGGCGCGGGAAGTTGCCCTACCG
CTCGGGCAAGCGCTGGCGGCAGGTGTTCCGGCCCAGTGGGGCGTCGTGGGCGTGGTACCCGTGCCGCTGCACCGCACCCG
ACAGCGGCAGCGCGGGTACAACCAGGCCGAACTGCTGGCCCGTACCATCGCTGCCGAACTGGGGGTGCCGTGCCTGCCCC
TGCTCGAACGCACCCGCGCCACCGCGCAGCAAGCCAAGCTGCACGCCAGCGAACGCACCAGCAATCTGGCCGGAGCCTTC
GCCGTGCGGGGAGAGCTTCCGGCGGGAACGCTGCTGCTGGTGGACGACGTGATGACTACCGCCAGCACGCTGTCGGCTTG
CCGTGAGGCGCTGACCGCTGCCGGGGTGCAGGAGTTGAAGTACGCGGCGGTGGCCCGCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-205)

Double zinc ribbon domain (DZR_2)

(5-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

76.214

100

0.762

Multiple sequence alignment