Detailed information NTG1094058

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACINK0_RS07840
• Genome accession: NZ_CP179945
• Coordinates: 1532427..1533602 (-)
• Length: 391 a.a.
• NCBI ID: WP_414656406.1
• Uniprot ID: -
• Organism: Deinococcus sp. VB343
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1527427..1538602

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACINK0_RS07820 (ACINK0_07820)	-	1527651..1528316 (-)	666	WP_414656402.1	TetR/AcrR family transcriptional regulator	-
ACINK0_RS07825 (ACINK0_07825)	-	1528604..1531159 (+)	2556	WP_414656403.1	outer membrane protein assembly factor	-
ACINK0_RS07830 (ACINK0_07830)	-	1531292..1531852 (+)	561	WP_414656404.1	VUT family protein	-
ACINK0_RS07835 (ACINK0_07835)	-	1531849..1532229 (+)	381	WP_414656405.1	hypothetical protein	-
ACINK0_RS07840 (ACINK0_07840)	pilD	1532427..1533602 (-)	1176	WP_414656406.1	prepilin peptidase	Machinery gene
ACINK0_RS07845 (ACINK0_07845)	pnp	1533727..1536060 (-)	2334	WP_414656407.1	polyribonucleotide nucleotidyltransferase	-
ACINK0_RS07850 (ACINK0_07850)	fusA	1536298..1538316 (+)	2019	WP_414656408.1	elongation factor G	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 41311.82 Da
• Isoelectric Point: 7.0617

>NTDB_id=1094058 ACINK0_RS07840 WP_414656406.1 1532427..1533602(-) (pilD) [Deinococcus sp. VB343]
MNPDLLFVLLAGILGLLVGSFSNVLIWRLPRGENIAFPPSHCPKCDHPLAPKDLVPLFSWLSLGGKCRYCRAPINPRYPI
VEALTGIGYAAIAAAFPFAVYGAGTLGLMVLFTILLVGSAIDLDTMTIPDELTLSGTLLGVLFGLAGAGLYAREGVLGLP
NVSQAVEGALLGAGVLVAIGVFGSWVMRRFRERRFPEMPLGYQQISLGLLAGAWLGPWWGLGVAALSILVNLLAKKVVRI
PELLTLGGFLVSLVLSSGGTGPSIGALAQGGLMAAGAVALVCGVYWWLYWRRNPETEDDGSDEDGDPVAMGFGDVKLAAA
IGAFLGWERLLMAVVAAIFAGAVLGLVQLALKKGRQIKFGPYLAFGAMVALFWGGPLLDAWQQWQNSLVQP

Nucleotide

• Length: 1176 bp

>NTDB_id=1094058 ACINK0_RS07840 WP_414656406.1 1532427..1533602(-) (pilD) [Deinococcus sp. VB343]
GTGAATCCCGACCTCCTTTTCGTCCTCCTCGCTGGCATTCTGGGCCTGCTGGTGGGGTCTTTTTCCAACGTGCTGATCTG
GCGGCTGCCACGCGGCGAAAACATCGCTTTTCCGCCCAGCCACTGCCCCAAGTGCGACCATCCTCTGGCCCCCAAAGACT
TGGTGCCGCTCTTTTCCTGGCTGTCGCTGGGCGGCAAATGCCGCTACTGCCGCGCTCCCATCAACCCGCGTTATCCCATC
GTCGAGGCGCTGACGGGCATCGGGTACGCCGCCATTGCCGCCGCTTTTCCCTTCGCTGTCTACGGGGCGGGCACGCTGGG
CCTGATGGTGCTGTTCACCATCTTGCTGGTCGGGAGCGCCATCGACCTCGACACCATGACCATTCCCGACGAGCTCACCC
TGTCGGGCACGCTGCTGGGGGTGCTGTTCGGGTTGGCGGGGGCCGGACTGTATGCCCGCGAGGGGGTGCTGGGCCTGCCT
AACGTGAGTCAGGCGGTAGAGGGCGCACTGCTGGGCGCGGGCGTGCTTGTCGCCATCGGGGTGTTCGGGTCGTGGGTGAT
GCGGCGCTTTCGTGAGCGGCGTTTTCCCGAGATGCCGCTGGGCTATCAGCAAATCAGCCTGGGCCTGCTGGCGGGCGCGT
GGCTGGGGCCGTGGTGGGGTCTGGGCGTGGCCGCGCTGTCCATTCTGGTCAACCTGCTCGCCAAAAAAGTGGTGCGAATT
CCCGAACTGCTGACCCTGGGCGGCTTTCTGGTCAGTCTGGTGCTGAGCAGCGGCGGCACTGGCCCCAGCATCGGCGCTCT
GGCGCAGGGCGGCCTGATGGCGGCGGGCGCAGTGGCGTTGGTCTGCGGCGTGTACTGGTGGCTGTACTGGCGCAGGAATC
CCGAAACAGAGGACGACGGCAGCGACGAGGACGGCGACCCGGTGGCGATGGGCTTCGGGGACGTGAAGTTGGCTGCAGCC
ATCGGCGCGTTCCTGGGCTGGGAAAGGCTGCTGATGGCGGTCGTGGCGGCCATTTTCGCGGGAGCAGTGCTGGGACTGGT
GCAACTCGCCCTGAAAAAGGGGCGGCAGATTAAATTCGGCCCCTATCTGGCCTTCGGGGCGATGGTGGCACTGTTCTGGG
GCGGCCCGCTGCTGGACGCCTGGCAGCAGTGGCAGAACTCTTTAGTGCAGCCCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-96)

• Type IV leader peptidase family (Peptidase_A24) (109-231)

• Type IV leader peptidase family (Peptidase_A24) (238-346)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	80.94	97.954	0.793