Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ACINK0_RS06875 Genome accession   NZ_CP179945
Coordinates   1321468..1322073 (-) Length   201 a.a.
NCBI ID   WP_303103188.1    Uniprot ID   -
Organism   Deinococcus sp. VB343     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1316468..1327073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACINK0_RS06860 (ACINK0_06860) - 1316729..1317244 (-) 516 WP_339093672.1 DUF2726 domain-containing protein -
  ACINK0_RS06865 (ACINK0_06865) - 1317406..1320615 (+) 3210 WP_414657653.1 (Fe-S)-binding protein -
  ACINK0_RS06870 (ACINK0_06870) - 1320805..1321437 (-) 633 WP_339093668.1 GNAT family protein -
  ACINK0_RS06875 (ACINK0_06875) recR 1321468..1322073 (-) 606 WP_303103188.1 recombination mediator RecR Machinery gene
  ACINK0_RS06880 (ACINK0_06880) - 1322135..1322425 (-) 291 WP_339093663.1 YbaB/EbfC family nucleoid-associated protein -
  ACINK0_RS06885 (ACINK0_06885) - 1322559..1323020 (+) 462 WP_339093660.1 Lrp/AsnC family transcriptional regulator -
  ACINK0_RS06890 (ACINK0_06890) - 1323166..1323945 (-) 780 WP_414657654.1 DUF937 domain-containing protein -
  ACINK0_RS06895 (ACINK0_06895) - 1324241..1324777 (-) 537 WP_414657655.1 adenylate kinase -
  ACINK0_RS06900 (ACINK0_06900) - 1324913..1325704 (+) 792 WP_414657656.1 ABC transporter permease -
  ACINK0_RS06905 (ACINK0_06905) - 1325701..1326591 (+) 891 WP_414657657.1 ABC transporter permease -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22060.45 Da        Isoelectric Point: 6.0158

>NTDB_id=1094055 ACINK0_RS06875 WP_303103188.1 1321468..1322073(-) (recR) [Deinococcus sp. VB343]
MKYPPSLVSLIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLASALLEAKRDLHVCPICFNITDAEKCDVCADPSREQQ
TICVVEEPGDVIAIERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVQPGMEVILATGTTVEGDATALYLQRLLEP
LGADISRIAYGVPVGGSLEYTDEVTLGRALTGRQRVSKREP

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1094055 ACINK0_RS06875 WP_303103188.1 1321468..1322073(-) (recR) [Deinococcus sp. VB343]
ATGAAATACCCTCCTTCCCTCGTCTCGCTTATTCGTGAACTGTCGCGCCTGCCGGGAATTGGCCCCAAGAGTGCCCAGCG
CCTCGCCTTTCACCTGTTCGAGCAGCCGCGTGAGGACATCGAGCGCCTCGCCTCGGCGCTGCTGGAAGCCAAGCGCGACC
TGCACGTCTGCCCCATCTGTTTCAACATCACCGACGCCGAGAAGTGCGACGTGTGCGCCGACCCCAGCCGCGAGCAGCAA
ACCATCTGCGTGGTCGAAGAGCCCGGCGACGTCATCGCCATCGAGCGCAGCGGCGAGTACCGGGGGCTGTACCACGTGCT
GCACGGCGTCCTGAGTCCTATGAACGGCGTCGGCCCCGACAAGCTGCACATCAAGCCGCTGCTGCCGCGCGTGCAGCCGG
GTATGGAAGTGATTCTGGCGACGGGCACGACGGTGGAAGGCGACGCCACCGCGCTCTATCTGCAACGCCTGCTGGAACCC
TTGGGCGCCGACATCAGCCGTATCGCCTACGGTGTCCCGGTGGGCGGTTCGCTGGAATACACCGACGAAGTCACGCTGGG
CCGCGCATTGACAGGCCGCCAGCGCGTGAGCAAGCGCGAGCCGTAA

Domains

Predicted by InterproScan.

RecR protein (RecR_ZnF)

(40-77)

Toprim domain (Toprim_4)

(81-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

95.522

100

0.955

Multiple sequence alignment