Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACGHBO_RS04350 Genome accession   NZ_AP031430
Coordinates   894869..896686 (+) Length   605 a.a.
NCBI ID   WP_390373426.1    Uniprot ID   -
Organism   Dorea formicigenerans strain i27-0019-1B6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 889869..901686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHBO_RS04330 (I2700191B6_08270) - 890238..891131 (+) 894 WP_390373420.1 DMT family transporter -
  ACGHBO_RS04335 (I2700191B6_08280) dtd 891168..891614 (+) 447 WP_005340750.1 D-aminoacyl-tRNA deacylase -
  ACGHBO_RS04340 (I2700191B6_08290) - 892074..892580 (+) 507 WP_242995194.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACGHBO_RS04345 (I2700191B6_08300) - 892636..894867 (+) 2232 WP_390373423.1 ABC transporter ATP-binding protein -
  ACGHBO_RS04350 (I2700191B6_08310) rcrQ 894869..896686 (+) 1818 WP_390373426.1 ABC transporter ATP-binding protein Regulator
  ACGHBO_RS04355 (I2700191B6_08320) - 897046..898008 (+) 963 WP_390373429.1 C39 family peptidase -
  ACGHBO_RS04360 (I2700191B6_08330) - 898158..899612 (+) 1455 WP_117494592.1 citrate/2-methylcitrate synthase -
  ACGHBO_RS04365 (I2700191B6_08340) - 899641..900255 (+) 615 WP_390373432.1 HD domain-containing protein -
  ACGHBO_RS04370 (I2700191B6_08350) - 900347..900991 (-) 645 WP_390373434.1 YkgJ family cysteine cluster protein -
  ACGHBO_RS04375 (I2700191B6_08360) - 901193..901501 (+) 309 WP_005335489.1 YerC/YecD family TrpR-related protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 67507.26 Da        Isoelectric Point: 6.5750

>NTDB_id=109317 ACGHBO_RS04350 WP_390373426.1 894869..896686(+) (rcrQ) [Dorea formicigenerans strain i27-0019-1B6]
MPRGRMGGRHGMSTEKAKDFKGTMKKLMGYLTQYKIGLLLVVIFAIGSTIFNIAGPKILGKATTELFHGLISKVSGGSGI
DFDKIAKILIGLMCLYVCSALFSFIQGYIMTGVSQKLTYRMRKEISEKIDRLPMGYFDKMTHGEILSRITNDVDTLSQSL
NQSATQVIISVATIIGVLVMMLSISPLMTVIAILILPLSMGLIGMIVKRSQRYFKEQQEYLGYVNGQVEEVYGGHNIVKA
FNKEDDVIDEFDRDNDRLYRSAWKSQFLSGMMMPIMQFVGNLGYVAVVILGGYLAIKKTIEVGDIQSFIQYVRNFTQPIQ
QVAQVANMLQSTAAASERVFEFLEEPEEEAAPENPVVLKNPEGAVEFEHVHFGYNPEHTIIHDFSVKVEPGQKIAIVGPT
GAGKTTMVKLLMRFYDVSGGSIKVDGHDIREFDRGELRRMFGMVLQDTWLFKGSIEDNIRYGKLDATHEDVVKAADAAYA
HRFIQTLPGGYGMELNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVRIQKAMDNLMKGRTSFIIAHRL
STIRDADLILVMKEGDIVEMGRHEELLAKNGFYADLYNSQFEQTA

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=109317 ACGHBO_RS04350 WP_390373426.1 894869..896686(+) (rcrQ) [Dorea formicigenerans strain i27-0019-1B6]
ATGCCAAGAGGACGTATGGGTGGCAGACACGGTATGAGCACCGAAAAAGCCAAAGATTTTAAAGGTACCATGAAGAAGCT
TATGGGATATCTTACACAGTATAAGATAGGTCTTCTCCTTGTAGTGATATTTGCAATAGGAAGTACTATATTTAATATTG
CAGGACCGAAGATTCTTGGAAAAGCAACAACAGAACTATTTCATGGACTGATAAGTAAAGTTTCCGGTGGAAGTGGAATT
GATTTTGATAAGATCGCAAAGATTCTCATCGGACTGATGTGCCTGTATGTGTGCAGTGCATTGTTCTCATTTATCCAGGG
ATACATTATGACAGGAGTTTCCCAGAAACTGACTTACAGAATGAGAAAAGAGATTTCGGAAAAGATTGACAGACTTCCGA
TGGGATATTTTGACAAGATGACACATGGTGAGATTCTTTCACGAATTACAAATGATGTGGATACTTTAAGTCAGAGTCTG
AACCAAAGTGCGACACAGGTTATTATTTCTGTTGCGACAATCATTGGAGTACTGGTCATGATGCTCAGCATCAGTCCGCT
TATGACAGTGATCGCAATTTTAATCCTTCCACTTTCCATGGGGCTGATTGGAATGATCGTGAAGCGTTCCCAGAGATATT
TCAAGGAACAGCAGGAGTATCTTGGATATGTTAATGGACAGGTAGAAGAGGTCTATGGCGGACATAATATTGTAAAGGCA
TTTAATAAAGAAGACGATGTCATAGATGAATTTGACAGAGATAATGACAGACTGTATCGTTCTGCATGGAAATCACAGTT
CTTATCCGGAATGATGATGCCGATCATGCAGTTCGTTGGAAACCTAGGCTATGTTGCAGTTGTAATTCTTGGTGGTTATC
TGGCAATTAAGAAGACTATTGAAGTCGGAGATATCCAGTCATTTATCCAATATGTGAGAAATTTTACACAGCCGATCCAG
CAGGTGGCACAGGTGGCAAATATGCTCCAGTCTACAGCAGCCGCTTCTGAGAGAGTGTTTGAGTTCTTAGAAGAGCCGGA
AGAAGAGGCAGCACCAGAAAATCCGGTTGTATTAAAGAATCCAGAAGGAGCTGTAGAATTTGAACATGTTCATTTTGGCT
ACAATCCGGAGCATACAATTATTCATGATTTCAGTGTAAAAGTAGAACCTGGACAGAAAATTGCAATTGTAGGACCGACC
GGAGCTGGCAAGACAACGATGGTAAAATTACTGATGCGTTTTTATGATGTGTCAGGTGGTTCCATCAAGGTAGATGGACA
TGATATCCGCGAGTTTGACAGAGGAGAACTGCGTCGTATGTTTGGTATGGTACTTCAGGATACATGGCTGTTCAAAGGAA
GTATTGAAGACAATATCCGTTATGGCAAATTGGATGCTACACATGAAGATGTGGTGAAAGCAGCGGATGCAGCTTATGCA
CACCGGTTTATCCAGACTCTGCCGGGTGGATATGGTATGGAGCTGAATGAAGAGGCAAGTAACGTATCCCAGGGACAGAA
ACAGCTTCTGACGATTGCAAGAGCGATTCTTGCAGATCCGAAGATTTTGATCTTAGATGAGGCTACAAGTTCGGTCGATA
CACGTACTGAGGTGCGTATTCAGAAAGCAATGGATAACCTGATGAAAGGACGCACAAGCTTTATTATCGCGCACCGTCTG
TCTACGATTCGTGACGCAGATCTGATCCTGGTCATGAAAGAGGGAGATATCGTGGAGATGGGCAGACATGAAGAACTCCT
TGCGAAAAATGGATTCTATGCGGATCTGTATAATTCACAGTTTGAACAGACTGCTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(38-318)

ABC transporter (ABC_tran)

(382-530)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.257

96.364

0.484

Multiple sequence alignment