Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ACMGE3_RS08310 Genome accession   NZ_CP179736
Coordinates   1591060..1593456 (-) Length   798 a.a.
NCBI ID   WP_414055084.1    Uniprot ID   -
Organism   Macrococcus sp. 18KM583     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1586060..1598456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGE3_RS08290 (ACMGE3_08290) - 1587101..1587430 (-) 330 WP_414053556.1 DUF1292 domain-containing protein -
  ACMGE3_RS08295 (ACMGE3_08295) ruvX 1587445..1587864 (-) 420 WP_414055082.1 Holliday junction resolvase RuvX -
  ACMGE3_RS08300 (ACMGE3_08300) - 1587857..1588126 (-) 270 WP_414046217.1 IreB family regulatory phosphoprotein -
  ACMGE3_RS08305 (ACMGE3_08305) alaS 1588188..1590812 (-) 2625 WP_414055083.1 alanine--tRNA ligase -
  ACMGE3_RS08310 (ACMGE3_08310) recD2 1591060..1593456 (-) 2397 WP_414055084.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACMGE3_RS08315 (ACMGE3_08315) - 1593459..1594118 (-) 660 WP_414055085.1 tetratricopeptide repeat protein -
  ACMGE3_RS08320 (ACMGE3_08320) mnmA 1594199..1595317 (-) 1119 WP_414055086.1 tRNA 2-thiouridine(34) synthase MnmA -
  ACMGE3_RS08325 (ACMGE3_08325) - 1595323..1596462 (-) 1140 WP_414055087.1 cysteine desulfurase family protein -
  ACMGE3_RS08330 (ACMGE3_08330) - 1596642..1597643 (+) 1002 WP_414055088.1 LLM class flavin-dependent oxidoreductase -
  ACMGE3_RS08335 (ACMGE3_08335) cymR 1597669..1598088 (-) 420 WP_414053549.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90885.52 Da        Isoelectric Point: 4.7065

>NTDB_id=1093160 ACMGE3_RS08310 WP_414055084.1 1591060..1593456(-) (recD2) [Macrococcus sp. 18KM583]
MENATLFDKSYVKGTINRILFQNNDNFYTVLKAEVIDTNEDFDDEVTVTGFLPQIAEGDTYTFTGKLVTHAKYGKQLQAE
KFEKDLPQSKDGIIHYLSSDLFKGIGKKTARTIVETLGEDALNIILDDKSSLDKISKLSQEKKDLIYNTINENQAIEKIM
IQLNEWGFGPQLAMKIYQFYKEDTVRAIKESPYQLVLDIEGIGFNKADDLAKHIGIDNNHPERLKAALVYGLDQASIQNG
HTYIPDQILLETSYELLTKNGSEVNPDSLVRALTELCEEKKFLVEHEKNIYIPSLFYSETKTVQILYRLMNHKDQLKEFE
QSEVMLAIGEIEQLFEVSYAEKQKEALMQAMKSKLMILSGGPGTGKTTVVRGIVTLYAELHGLSLDYNDYEGQDFPIVVA
APTGRASKRLYESTGLEATTIHRLIGWTRDNKPDDILENEITAKLIIIDEMSMVDTWLMFQLMKAVPNDAQIIFVGDQDQ
LPSVGPGQVFKDLIESQIIPQIELNEVYRQQEGSSIVELAHQIKRNEPFDITQRYSDRSFIPCHTEQIPEVIEKVVTSAV
NKGYDMRDIQVLAPIYRGNAGIRALNKVLQRILNPADDKKREMIFGEIVYRHHDKVLQLVNRPEDGVFNGDIGEVVGIFK
ANENALNKDVVIVDYDGNEVTYTKADLIEITHAYCCSIHKSQGSEFPIVIMPVVNQYYRMLQKNILYTGLTRAKQSLIFC
GDVNAFNEGIKRLGNARFTSFYQFLMDYFNTDEQKTITQENSLQSYVLPFKVGEMTEENMHLISPMINMEDISPYDYV

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=1093160 ACMGE3_RS08310 WP_414055084.1 1591060..1593456(-) (recD2) [Macrococcus sp. 18KM583]
TTGGAGAATGCCACTTTATTCGACAAATCTTATGTAAAAGGCACTATTAACCGTATATTGTTTCAAAATAATGATAACTT
TTATACGGTTTTGAAAGCCGAAGTAATTGATACAAATGAAGATTTTGACGATGAAGTGACGGTTACAGGGTTTCTTCCGC
AAATTGCTGAAGGGGATACTTATACGTTCACTGGTAAGCTGGTCACGCACGCTAAGTATGGGAAACAGCTTCAAGCTGAA
AAGTTTGAAAAAGATTTACCTCAGTCAAAAGATGGAATCATCCATTATTTATCAAGCGATTTATTTAAAGGAATCGGAAA
GAAGACAGCTCGTACAATTGTTGAGACACTCGGGGAAGATGCATTAAATATTATCTTAGATGATAAGTCAAGCTTAGATA
AAATATCGAAGCTATCCCAGGAAAAAAAAGATTTAATTTATAATACGATAAATGAAAACCAAGCAATCGAAAAAATTATG
ATTCAGCTCAATGAATGGGGATTCGGACCGCAGCTTGCAATGAAAATCTATCAGTTTTATAAAGAGGACACTGTCCGTGC
GATTAAAGAATCACCTTACCAACTAGTTCTGGATATAGAAGGGATAGGGTTTAATAAGGCGGACGATCTTGCAAAACATA
TTGGGATTGATAACAATCACCCGGAAAGACTTAAGGCAGCACTTGTCTATGGACTTGATCAGGCATCTATACAAAATGGA
CATACTTATATACCGGATCAGATATTACTGGAAACAAGCTATGAATTGCTTACCAAAAACGGTTCAGAGGTCAATCCTGA
TAGCCTTGTTCGTGCACTGACTGAACTATGTGAGGAAAAGAAATTCTTAGTTGAACATGAAAAAAATATATACATACCTA
GTCTATTTTATTCTGAGACAAAGACCGTACAAATCTTATATCGATTGATGAATCATAAAGATCAACTGAAAGAATTTGAA
CAATCTGAAGTTATGCTTGCCATTGGTGAAATTGAACAATTATTTGAAGTATCATACGCAGAAAAGCAAAAGGAAGCGTT
AATGCAGGCAATGAAAAGCAAACTAATGATTCTATCAGGTGGTCCTGGGACCGGTAAAACAACTGTCGTAAGAGGCATTG
TGACGTTATATGCAGAATTACATGGTCTAAGTCTAGATTATAATGATTATGAGGGACAAGATTTTCCTATCGTTGTGGCT
GCACCGACAGGTAGAGCTTCGAAACGCTTATATGAGTCAACAGGTCTTGAAGCTACTACGATACATCGTTTAATCGGTTG
GACGAGAGATAACAAACCGGATGATATTTTAGAAAACGAAATTACTGCTAAGCTAATCATTATTGATGAGATGTCAATGG
TTGATACCTGGTTGATGTTTCAGTTGATGAAAGCCGTTCCTAACGATGCACAAATCATCTTTGTAGGTGATCAGGATCAG
TTACCGTCAGTCGGCCCTGGTCAAGTATTTAAAGATTTAATAGAATCACAAATTATTCCGCAGATCGAACTGAATGAAGT
ATATCGTCAACAGGAAGGTTCATCGATTGTTGAACTCGCACACCAGATTAAACGAAACGAACCATTTGATATTACACAAC
GGTATAGTGACCGTAGTTTTATTCCTTGTCATACAGAACAAATACCAGAGGTTATTGAAAAGGTGGTGACTTCTGCTGTA
AATAAAGGATATGATATGCGTGACATTCAAGTCCTCGCCCCTATTTACCGTGGGAACGCCGGTATTCGAGCACTGAATAA
AGTGTTACAAAGAATCCTCAATCCTGCAGACGATAAAAAGCGTGAAATGATTTTTGGTGAAATAGTATACCGTCACCATG
ATAAAGTTCTACAGCTTGTTAATCGACCTGAAGATGGGGTGTTTAACGGTGATATCGGTGAAGTTGTCGGCATTTTTAAA
GCGAATGAAAATGCGCTGAATAAAGATGTCGTCATAGTTGATTATGACGGTAATGAAGTAACCTATACGAAAGCAGATTT
AATAGAAATTACGCATGCCTATTGTTGCTCGATTCATAAATCACAAGGTTCAGAGTTTCCGATCGTTATTATGCCTGTCG
TCAATCAATATTATAGAATGCTTCAAAAAAATATATTATATACAGGTTTAACACGTGCGAAACAGTCTTTAATTTTCTGT
GGTGATGTGAATGCATTTAATGAGGGAATTAAGCGTCTAGGGAATGCCCGATTCACATCTTTCTATCAATTTTTAATGGA
CTATTTTAATACAGATGAACAAAAAACAATAACCCAGGAAAATTCCTTACAAAGTTATGTCTTACCATTTAAAGTTGGTG
AGATGACTGAAGAAAATATGCATCTCATTTCTCCGATGATTAATATGGAAGATATTTCACCATATGATTACGTTTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-653)

AAA domain (AAA_30)

(339-545)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.563

100

0.506

Multiple sequence alignment