Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ACMGE6_RS09240 Genome accession   NZ_CP179732
Coordinates   1762732..1765128 (+) Length   798 a.a.
NCBI ID   WP_414053554.1    Uniprot ID   -
Organism   Macrococcus sp. 21KM1573     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1757732..1770128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGE6_RS09215 (ACMGE6_09215) cymR 1758100..1758519 (+) 420 WP_414053549.1 cysteine metabolism transcriptional regulator CymR -
  ACMGE6_RS09220 (ACMGE6_09220) - 1758545..1759546 (-) 1002 WP_414053550.1 LLM class flavin-dependent oxidoreductase -
  ACMGE6_RS09225 (ACMGE6_09225) - 1759726..1760865 (+) 1140 WP_414053551.1 cysteine desulfurase family protein -
  ACMGE6_RS09230 (ACMGE6_09230) mnmA 1760871..1761989 (+) 1119 WP_414053552.1 tRNA 2-thiouridine(34) synthase MnmA -
  ACMGE6_RS09235 (ACMGE6_09235) - 1762070..1762729 (+) 660 WP_414053553.1 tetratricopeptide repeat protein -
  ACMGE6_RS09240 (ACMGE6_09240) recD2 1762732..1765128 (+) 2397 WP_414053554.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACMGE6_RS09245 (ACMGE6_09245) alaS 1765376..1768000 (+) 2625 WP_414053555.1 alanine--tRNA ligase -
  ACMGE6_RS09250 (ACMGE6_09250) - 1768062..1768331 (+) 270 WP_414046217.1 IreB family regulatory phosphoprotein -
  ACMGE6_RS09255 (ACMGE6_09255) ruvX 1768324..1768743 (+) 420 WP_414046218.1 Holliday junction resolvase RuvX -
  ACMGE6_RS09260 (ACMGE6_09260) - 1768758..1769087 (+) 330 WP_414053556.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90821.54 Da        Isoelectric Point: 4.7310

>NTDB_id=1093067 ACMGE6_RS09240 WP_414053554.1 1762732..1765128(+) (recD2) [Macrococcus sp. 21KM1573]
MENATLFDKSYVKGTINRILFQNNDNFYTVLKAEVIDTNEDFDDEVTVTGFLPQIAEGDTYTFTGKLVTHAKYGKQLQAE
KFEKDLPQSKDGIIHYLSSDLFKGIGKKTARTIVETLGEDALNIILDDKSSLDKIPKLSQEKKDLIYNTINENQAIEKIM
IQLNDWGFGPQLAMKIYQFYKEDTVRAIKESPYQLVLDIEGIGFNKADDLAKHIGIDNNHPERLKAALVYGLDQASMQNG
HTFIPDQILLETSYELLTKNGSEVNPDSLVRALTELCEEKKFLVEHEKNIYIPSLFYSETKTVQILYRLMNHKDQLKEFE
QSEVMLAIGEIEQLFEVSYAEKQKEALMQAMKSKLMILSGGPGTGKTTVVRGIVTLYAELHGLSLDYNDYEGQDFPIVVA
APTGRASKRLYESTGLEATTIHRLIGWTRDNKPDDILENEITAKLIIIDEMSMVDTWLMFQLMKAVPNDAQIIFVGDQDQ
LPSVGPGQVFKDLIESQIIPQIELNEVYRQQEGSSIVELAHQIKRNEPFDITQRYSDRSFIPCHTEQIPEVIEKVVTSAV
NKGYDMRDIQVLAPIYRGKAGIRALNKVLQRILNPADDKKREMIFGEIVYRHHDKVLQLVNRPEDGVFNGDIGEVVGIFK
ANENALNKDVVIVDYDGNEVTYTKADLIEITHAYCCSIHKSQGSEFPIVIMPVVNQYYRMLQKNILYTGLTRAKQSLIFC
GDVNAFNEGIKRLGNARFTSFYQFLMDYFNTDEQKTITQENSLQSSVLPFKVGEMTEENMHLISPMINMEDISPYDYV

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=1093067 ACMGE6_RS09240 WP_414053554.1 1762732..1765128(+) (recD2) [Macrococcus sp. 21KM1573]
TTGGAGAATGCCACTTTATTCGACAAATCTTATGTAAAAGGCACTATTAACCGTATATTGTTTCAAAATAATGATAACTT
TTATACGGTTTTGAAAGCCGAAGTAATTGATACAAATGAAGATTTTGACGATGAAGTGACGGTTACAGGGTTTCTTCCGC
AAATTGCTGAAGGGGATACTTATACGTTCACTGGTAAGCTGGTCACGCACGCTAAGTATGGGAAACAGCTTCAAGCTGAA
AAGTTTGAAAAAGATTTACCTCAGTCAAAAGATGGAATCATCCATTATTTATCAAGCGATTTATTTAAAGGAATCGGAAA
GAAGACAGCTCGTACAATTGTTGAGACACTCGGGGAAGATGCATTAAATATTATCTTAGATGATAAGTCAAGCTTAGATA
AAATACCGAAGCTATCCCAGGAAAAAAAAGATTTAATTTATAATACGATAAATGAAAACCAAGCAATCGAAAAAATTATG
ATTCAGCTCAATGACTGGGGATTCGGACCGCAGCTTGCAATGAAAATCTATCAGTTTTATAAAGAGGACACTGTCCGTGC
GATTAAAGAATCACCTTACCAACTAGTTCTGGATATAGAAGGGATAGGATTTAATAAGGCGGACGATCTTGCAAAACATA
TTGGGATTGATAACAATCACCCGGAAAGACTTAAGGCAGCACTTGTCTATGGACTTGATCAGGCATCAATGCAAAATGGA
CATACTTTTATACCGGATCAAATATTACTGGAAACAAGCTATGAATTGCTTACCAAAAACGGTTCAGAGGTCAATCCTGA
TAGCCTTGTTCGTGCACTGACTGAACTATGTGAGGAAAAAAAATTCTTAGTTGAACATGAAAAAAATATATACATACCTA
GTCTATTTTATTCTGAGACAAAGACCGTACAAATCTTATATCGATTGATGAATCATAAAGATCAACTGAAAGAATTTGAA
CAATCTGAAGTTATGCTTGCCATTGGTGAAATTGAACAATTATTTGAAGTATCATACGCAGAAAAGCAAAAAGAAGCGTT
AATGCAGGCAATGAAAAGCAAACTAATGATTCTATCAGGTGGTCCTGGGACCGGTAAAACAACTGTCGTAAGAGGCATTG
TGACGTTATATGCAGAATTACATGGTCTAAGTCTAGATTATAATGATTATGAGGGACAAGATTTTCCTATCGTTGTGGCT
GCACCGACAGGTAGAGCTTCGAAACGCTTATATGAGTCAACAGGTCTTGAAGCTACTACGATACATCGTTTAATCGGTTG
GACGAGAGATAACAAACCGGATGATATTTTAGAAAACGAAATTACTGCTAAGCTAATCATTATTGATGAGATGTCAATGG
TTGATACCTGGTTGATGTTTCAGTTGATGAAAGCCGTTCCTAACGATGCACAAATCATCTTTGTAGGTGATCAGGATCAG
TTACCGTCAGTCGGCCCTGGTCAAGTATTTAAAGATCTAATAGAATCACAAATTATTCCGCAGATCGAACTGAATGAAGT
ATATCGTCAACAGGAAGGTTCATCGATTGTTGAACTCGCACACCAGATTAAACGAAACGAACCCTTTGATATTACACAAC
GGTATAGTGACCGTAGTTTTATTCCTTGTCATACAGAACAAATACCAGAGGTTATTGAAAAGGTGGTGACTTCTGCTGTA
AATAAAGGATATGATATGCGTGACATTCAAGTCCTCGCCCCTATTTACCGTGGGAAAGCCGGTATTCGAGCACTGAATAA
AGTGTTACAAAGAATCCTCAATCCTGCAGACGATAAAAAGCGTGAAATGATTTTTGGTGAAATAGTATATCGTCACCATG
ATAAAGTTCTACAGCTTGTTAATCGACCTGAAGATGGGGTGTTTAACGGTGATATCGGTGAAGTTGTCGGCATTTTTAAA
GCGAATGAAAATGCGCTGAATAAAGATGTCGTCATTGTTGATTATGACGGTAATGAAGTAACCTATACGAAAGCAGATTT
AATAGAAATTACGCATGCCTATTGTTGCTCGATTCATAAATCACAAGGTTCAGAGTTTCCGATCGTTATTATGCCTGTCG
TCAATCAATATTATAGAATGCTTCAAAAAAATATATTATATACAGGTTTAACACGTGCGAAACAGTCTTTAATTTTCTGT
GGTGATGTGAATGCATTTAATGAGGGAATTAAGCGTCTAGGGAATGCCCGATTCACATCTTTCTATCAATTTTTAATGGA
CTATTTTAATACAGATGAACAAAAAACAATAACCCAGGAAAATTCCTTACAAAGTTCTGTCTTACCATTTAAAGTTGGTG
AGATGACTGAGGAAAATATGCATCTCATTTCTCCGATGATTAATATGGAAGATATTTCACCATATGATTACGTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-653)

AAA domain (AAA_30)

(339-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.688

100

0.508

Multiple sequence alignment