Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACGHUL_RS05220 Genome accession   NZ_AP031429
Coordinates   1108156..1109970 (+) Length   604 a.a.
NCBI ID   WP_118225619.1    Uniprot ID   -
Organism   Dorea longicatena strain i26-0019-D6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1103156..1114970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHUL_RS05210 (I260019D6_10170) - 1105343..1105843 (+) 501 WP_390606928.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACGHUL_RS05215 (I260019D6_10180) - 1105923..1108169 (+) 2247 WP_390606931.1 ABC transporter ATP-binding protein -
  ACGHUL_RS05220 (I260019D6_10190) rcrQ 1108156..1109970 (+) 1815 WP_118225619.1 ABC transporter ATP-binding protein Regulator
  ACGHUL_RS05225 (I260019D6_10210) - 1110422..1111648 (-) 1227 WP_028088325.1 argininosuccinate synthase -
  ACGHUL_RS05230 (I260019D6_10220) tnpA 1112040..1112447 (+) 408 WP_055182673.1 IS200/IS605 family transposase -
  ACGHUL_RS05235 (I260019D6_10230) - 1112444..1113550 (+) 1107 WP_390606935.1 RNA-guided endonuclease TnpB family protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67417.84 Da        Isoelectric Point: 6.6264

>NTDB_id=109305 ACGHUL_RS05220 WP_118225619.1 1108156..1109970(+) (rcrQ) [Dorea longicatena strain i26-0019-D6]
MPRGRGHGPRMSNEKAKDFKGTMKKLMAYLSTYKIGIFFVIVFAIGSTIFNIVGPKILGKATTEIFKGLVRKVSGGAGID
FDKIAHIVLTLLCLYLASAVFSFVQGYIMTGVSQKLTYRLRKEISEKINRLPMNYFDKQTHGEVLSRITNDIDTLSQSLN
QSATQVITSVTTIIGVLIMMLSISPLMTLVALLILPVSMGLISMIVKRSQKYFMSQQEYLGHVNGQVEEIYGGHNIIKAF
NKEEDVIATFKRDNDILYTSAWKSQFLSGMMMPIMQFVGNLGYVGEVILGGYLAMKGTIQVGDIQSFIQYVRSFTQPIQQ
VAQVANMLQSTAAASERVFEFLEEAEEDQTVEHPVCIDEMEGSVSFEHVHFGYNPDHTIINDFSVDVKSGQKVAIVGPTG
AGKTTIIKLLMRFYDVGSGSIKVDGHDVRDFNRDDLRKMFGMVLQDTWLFKGSIEDNIRYGRLDATHEEVVEAAKAARAH
RFIQTLPGGYQMELNEEASNVSQGQKQLLTIARAMLADPKILILDEATSSVDTRTEIQIQKAMDQLMKGRTSFVIAHRLS
TIRDADMILVMKDGDIVEQGNHEELLAQNGFYAELYNSQFERSA

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=109305 ACGHUL_RS05220 WP_118225619.1 1108156..1109970(+) (rcrQ) [Dorea longicatena strain i26-0019-D6]
ATGCCAAGAGGTAGAGGACATGGACCGAGAATGTCCAATGAAAAGGCAAAAGATTTTAAAGGCACGATGAAAAAGCTGAT
GGCATATTTGAGCACATATAAGATTGGAATATTTTTTGTGATTGTATTTGCCATCGGGAGTACGATATTTAATATCGTAG
GACCGAAGATACTTGGAAAAGCAACGACCGAGATATTTAAAGGTCTGGTCAGAAAAGTATCGGGCGGAGCCGGGATTGAT
TTTGACAAGATCGCACATATTGTACTGACTCTGTTATGCCTGTATCTGGCAAGTGCAGTGTTTTCATTCGTACAGGGATA
TATCATGACAGGAGTATCACAGAAGCTGACCTACCGTCTGAGAAAAGAAATCTCAGAGAAAATCAACCGCCTGCCGATGA
ATTATTTTGATAAACAGACACATGGAGAGGTGTTATCCCGTATCACAAATGATATAGATACTTTAAGCCAGAGCCTGAAC
CAGAGTGCAACGCAGGTGATCACATCGGTGACAACGATCATAGGTGTGCTGATCATGATGCTCAGTATCAGTCCACTGAT
GACATTGGTAGCACTTCTGATTCTTCCGGTCTCAATGGGACTGATCTCTATGATCGTAAAACGTTCGCAGAAGTACTTCA
TGAGCCAACAGGAGTATCTGGGACATGTAAATGGACAGGTAGAAGAAATCTATGGCGGTCATAATATCATCAAAGCATTC
AATAAAGAGGAGGATGTAATCGCAACATTCAAGAGAGACAATGATATTTTGTATACATCTGCATGGAAATCACAGTTTCT
TTCCGGAATGATGATGCCAATCATGCAGTTTGTCGGAAATCTTGGTTATGTCGGAGAGGTTATCCTGGGCGGTTATCTTG
CTATGAAAGGAACGATTCAGGTTGGTGATATCCAGTCTTTTATCCAGTATGTAAGAAGCTTTACGCAGCCGATCCAGCAG
GTTGCGCAGGTGGCAAATATGTTACAGTCCACAGCTGCAGCGTCTGAGCGTGTCTTCGAATTCCTTGAGGAGGCGGAAGA
AGACCAGACAGTGGAACATCCGGTATGTATTGATGAAATGGAAGGAAGCGTAAGCTTTGAACATGTCCATTTCGGATATA
ATCCGGATCACACGATCATCAATGATTTTAGTGTGGATGTAAAGTCAGGACAGAAGGTTGCGATTGTAGGACCTACCGGT
GCCGGAAAGACGACGATCATCAAATTACTGATGCGTTTTTATGATGTCGGAAGTGGTTCGATCAAAGTGGACGGGCATGA
TGTCCGTGACTTTAACCGCGATGATCTGAGAAAAATGTTCGGAATGGTATTACAGGATACCTGGCTGTTCAAAGGAAGTA
TCGAAGATAATATCCGTTATGGACGGCTGGATGCAACGCATGAAGAGGTAGTGGAGGCTGCGAAGGCAGCACGTGCACAC
CGCTTTATCCAGACCCTTCCGGGTGGTTATCAGATGGAGTTAAATGAAGAAGCAAGTAATGTGTCACAGGGACAGAAGCA
GCTTCTGACAATTGCAAGAGCAATGCTTGCAGATCCTAAGATACTGATCCTTGATGAGGCAACAAGTTCGGTAGATACAA
GAACCGAAATTCAGATCCAGAAGGCAATGGATCAGTTGATGAAAGGAAGAACCAGCTTTGTGATCGCACATAGACTGTCA
ACAATACGTGATGCAGATATGATTCTGGTTATGAAAGACGGAGATATCGTAGAACAGGGAAATCATGAAGAACTTCTTGC
ACAGAATGGATTCTATGCTGAACTGTATAATTCACAGTTTGAAAGAAGTGCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-317)

ABC transporter (ABC_tran)

(381-529)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

49.831

98.013

0.488

Multiple sequence alignment