Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACGHUK_RS08550 Genome accession   NZ_AP031428
Coordinates   1738544..1740355 (+) Length   603 a.a.
NCBI ID   WP_223389618.1    Uniprot ID   -
Organism   Faecalibacterium sp. i25-0019-C1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1733544..1745355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHUK_RS08530 (I250019C1_16790) - 1733810..1734466 (-) 657 WP_390574027.1 sortase -
  ACGHUK_RS08535 (I250019C1_16800) - 1734547..1735530 (-) 984 WP_390574028.1 Na/Pi cotransporter family protein -
  ACGHUK_RS08540 (I250019C1_16810) - 1735733..1736239 (+) 507 WP_242702969.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACGHUK_RS08545 (I250019C1_16820) - 1736236..1738542 (+) 2307 WP_390574030.1 ABC transporter ATP-binding protein -
  ACGHUK_RS08550 (I250019C1_16830) rcrQ 1738544..1740355 (+) 1812 WP_223389618.1 ABC transporter ATP-binding protein Regulator
  ACGHUK_RS08555 (I250019C1_16840) - 1740569..1741492 (-) 924 WP_223389616.1 LysR family transcriptional regulator -
  ACGHUK_RS08560 (I250019C1_16850) - 1741653..1743683 (+) 2031 WP_223389608.1 FAD-binding protein -
  ACGHUK_RS08565 (I250019C1_16860) - 1743885..1744805 (+) 921 WP_005945749.1 AAA family ATPase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 66797.18 Da        Isoelectric Point: 6.7644

>NTDB_id=109294 ACGHUK_RS08550 WP_223389618.1 1738544..1740355(+) (rcrQ) [Faecalibacterium sp. i25-0019-C1]
MPRPGRMTTERAKDFKGTLLQLVRNLGRYRLSLVTAIVFAILSTIFNIAGPKVLAKATTALATGWIAKLRGTGSIDFVYI
GRILLFLLGMYLLSSAFSFIQGWLMTGLSQKVCYDFRKQISEKINRLPLAYFEKRTVGEVLSRITNDVDTLGQSLNQSIT
QLITSVTTMIGVLVMMLSISPKMTLIALLILPVSLVLVLIVVKFSQKYFKAQQAILGVVNGQVEEVYSGHNVVKAFNREA
VVLNDFNAANDKLYESAWKSQFLSGLMMPIMNFVGNLGYVAVAIVGSIFAANGTITIGDIQAFIQYVKNFTQPIQQLSQV
SNMLQSMAAAAERVFEFLNEPEEDQQADPARRADPGCINGQVTFSHVRFGYTPDKTVIRDFSCEVKPGQKVAIVGPTGAG
KTTMVKLLMRFYDVDSGSITLNGHDVRDFDRSALREGFGMVLQDTWLFKGTIMENIRYGRLDATDEEVIAAAKAANADHF
IRTLPGGYQMELNEDASNVSQGQKQLLTIARTILADNRILILDEATSSVDTRTEQRIQTAMDRLMEGRTSFVIAHRLSTI
RDADLILVMRDGDIVEQGTHDQLIEAGGFYADLYNSQFEDVVE

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=109294 ACGHUK_RS08550 WP_223389618.1 1738544..1740355(+) (rcrQ) [Faecalibacterium sp. i25-0019-C1]
ATGCCAAGACCCGGACGCATGACGACCGAACGCGCCAAGGACTTCAAGGGCACCCTGCTGCAGCTTGTGCGCAACCTTGG
CCGCTACCGCCTTTCGCTCGTTACCGCCATTGTATTTGCCATTCTTTCTACCATCTTCAACATTGCAGGTCCCAAGGTGC
TGGCAAAGGCCACCACGGCTCTTGCCACCGGCTGGATCGCCAAGCTGCGCGGCACCGGCAGCATCGACTTTGTGTATATC
GGCCGCATCCTGCTGTTTTTGCTGGGCATGTACCTGCTGAGCAGCGCCTTCAGCTTTATTCAGGGCTGGCTCATGACCGG
CCTTTCCCAGAAAGTCTGCTACGACTTCCGCAAGCAGATCAGCGAAAAGATCAACCGCCTGCCCCTTGCCTACTTTGAAA
AGCGCACCGTGGGCGAGGTGCTGTCCCGCATCACCAACGATGTGGACACGCTGGGCCAGAGCCTGAACCAGAGCATCACC
CAGCTCATCACCAGTGTGACCACCATGATCGGCGTGCTGGTCATGATGCTGTCCATCAGCCCGAAGATGACCCTGATCGC
CCTGCTGATCCTGCCGGTCTCGCTGGTGCTGGTGCTCATCGTGGTCAAGTTCAGCCAGAAATACTTCAAGGCACAGCAGG
CCATTCTGGGCGTTGTGAACGGTCAGGTGGAAGAAGTCTACTCCGGCCACAACGTGGTCAAAGCCTTCAACCGCGAGGCC
GTGGTGCTGAACGACTTCAACGCCGCCAACGATAAGCTGTACGAATCCGCATGGAAGAGCCAGTTCCTCTCCGGCCTGAT
GATGCCCATTATGAACTTTGTGGGCAATCTGGGCTACGTGGCAGTGGCCATCGTGGGCAGCATTTTTGCGGCAAACGGCA
CCATTACCATCGGTGACATTCAGGCCTTCATCCAGTACGTCAAGAACTTCACCCAGCCCATCCAGCAGCTTTCTCAGGTG
TCCAACATGCTGCAGAGCATGGCCGCTGCCGCTGAGCGGGTGTTCGAGTTTCTGAACGAGCCGGAAGAGGATCAGCAGGC
AGACCCGGCCCGCCGGGCCGACCCCGGCTGCATCAACGGTCAGGTGACATTCAGTCATGTCCGCTTCGGCTACACCCCGG
ACAAGACCGTCATCCGCGATTTCAGCTGTGAGGTCAAGCCCGGCCAGAAGGTGGCTATCGTCGGCCCTACCGGCGCGGGC
AAAACTACCATGGTCAAGCTGCTCATGCGCTTCTATGATGTGGATTCCGGTTCCATCACCCTGAATGGCCACGATGTGCG
TGACTTTGACCGCAGCGCTCTGCGCGAGGGCTTCGGCATGGTGCTGCAGGACACATGGCTGTTCAAGGGCACCATCATGG
AGAACATCCGCTATGGCCGACTGGATGCTACCGACGAAGAAGTGATCGCCGCCGCCAAGGCTGCCAACGCTGACCACTTC
ATCCGCACCCTGCCCGGCGGCTACCAGATGGAGCTGAACGAAGACGCTTCCAACGTGAGTCAGGGCCAGAAGCAGCTGCT
CACCATCGCCCGCACCATTCTGGCAGATAACCGCATCCTGATTTTGGACGAGGCCACCAGCAGCGTGGATACCCGTACCG
AGCAGCGCATCCAGACCGCCATGGACCGCCTGATGGAGGGCCGCACCAGCTTTGTGATCGCACACCGTCTTTCCACCATC
CGGGATGCCGACCTCATCCTTGTAATGCGAGATGGCGATATTGTGGAGCAGGGCACCCACGACCAGCTGATCGAAGCAGG
CGGCTTCTACGCCGACCTGTACAACAGCCAGTTCGAGGACGTGGTGGAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(379-527)

ABC transporter transmembrane region (ABC_membrane)

(34-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.767

97.347

0.494

Multiple sequence alignment