Detailed information NTG1092849

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACK25W_RS07600
• Genome accession: NZ_CP179722
• Coordinates: 1520227..1521006 (+)
• Length: 259 a.a.
• NCBI ID: WP_012009951.1
• Uniprot ID: A8FD81
• Organism: Bacillus pumilus strain FJAT-56819
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1515227..1526006

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACK25W_RS07580 (ACK25W_07580)	trmFO	1515931..1517235 (+)	1305	WP_034662383.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACK25W_RS07585 (ACK25W_07585)	xerC	1517298..1518215 (+)	918	WP_060596252.1	tyrosine recombinase XerC	-
ACK25W_RS07590 (ACK25W_07590)	hslV	1518230..1518775 (+)	546	WP_003211247.1	ATP-dependent protease subunit HslV	-
ACK25W_RS07595 (ACK25W_07595)	hslU	1518792..1520192 (+)	1401	WP_060596254.1	HslU--HslV peptidase ATPase subunit	-
ACK25W_RS07600 (ACK25W_07600)	codY	1520227..1521006 (+)	780	WP_012009951.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACK25W_RS07605 (ACK25W_07605)	flgB	1521294..1521683 (+)	390	WP_012009952.1	flagellar basal body rod protein FlgB	-
ACK25W_RS07610 (ACK25W_07610)	flgC	1521683..1522135 (+)	453	WP_012009953.1	flagellar basal body rod protein FlgC	-
ACK25W_RS07615 (ACK25W_07615)	fliE	1522147..1522464 (+)	318	WP_007499609.1	flagellar hook-basal body complex protein FliE	-
ACK25W_RS07620 (ACK25W_07620)	fliF	1522514..1524106 (+)	1593	WP_060596256.1	flagellar basal-body MS-ring/collar protein FliF	-
ACK25W_RS07625 (ACK25W_07625)	fliG	1524118..1525134 (+)	1017	WP_008344808.1	flagellar motor switch protein FliG	-
ACK25W_RS07630 (ACK25W_07630)	fliH	1525127..1525891 (+)	765	WP_034662367.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29044.31 Da
• Isoelectric Point: 4.6614

>NTDB_id=1092849 ACK25W_RS07600 WP_012009951.1 1520227..1521006(+) (codY) [Bacillus pumilus strain FJAT-56819]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1092849 ACK25W_RS07600 WP_012009951.1 1520227..1521006(+) (codY) [Bacillus pumilus strain FJAT-56819]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAGGAAAT
GGCAGAAACGTTGAGAGATGTCATTGATTCAAACATTTTCGTGTTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAACCTTGACATTAATAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTCGA
ATCAGGTTTGACAACCATTGTTCCAATTATCGGAGGAGGAGATCGTTTAGGCACGTTAATCCTGTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCCGTTGTCCAAATGGCGATTAGTTCTCTATCATATAGTGAGCTTGAAGCCAT
TGAGCACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTTGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATCGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: A8FD81

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	95.753	100	0.958
codY	Lactococcus lactis subsp. lactis strain DGCC12653	48.031	98.069	0.471