Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACGHP1_RS09850 Genome accession   NZ_AP031425
Coordinates   1969979..1971790 (+) Length   603 a.a.
NCBI ID   WP_390509238.1    Uniprot ID   -
Organism   Faecalibacterium sp. i21-0019-B1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1964979..1976790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHP1_RS09830 (I210019B1_19400) - 1965245..1965901 (-) 657 WP_097775336.1 sortase -
  ACGHP1_RS09835 (I210019B1_19410) - 1965982..1966965 (-) 984 WP_390509232.1 Na/Pi cotransporter family protein -
  ACGHP1_RS09840 (I210019B1_19420) - 1967168..1967674 (+) 507 WP_194173936.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACGHP1_RS09845 (I210019B1_19430) - 1967671..1969977 (+) 2307 WP_390509236.1 ABC transporter ATP-binding protein -
  ACGHP1_RS09850 (I210019B1_19440) rcrQ 1969979..1971790 (+) 1812 WP_390509238.1 ABC transporter ATP-binding protein Regulator
  ACGHP1_RS09855 (I210019B1_19450) - 1972004..1972927 (-) 924 WP_390509240.1 LysR family transcriptional regulator -
  ACGHP1_RS09860 (I210019B1_19460) - 1973088..1975118 (+) 2031 WP_390509242.1 FAD-binding protein -
  ACGHP1_RS09865 (I210019B1_19470) - 1975320..1976240 (+) 921 WP_390509244.1 AAA family ATPase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 66744.07 Da        Isoelectric Point: 6.7644

>NTDB_id=109267 ACGHP1_RS09850 WP_390509238.1 1969979..1971790(+) (rcrQ) [Faecalibacterium sp. i21-0019-B1]
MPRPGRMTTERAKDFKGTLLQLVRTLGRYRLSLVTAIVFAILSTIFNIAGPKVLAKATTALATGWIAKLRGTGSIDFVYI
GRILLFLLGMYLLSSAFSFIQGWLMTGLSQKVCYDFRKQISEKINRLPLAYFEKRTVGEVLSRITNDVDTLGQSLNQSIT
QLITSVTTMIGVLVMMLSISPKMTLIALLILPVSLVLVLIVVKFSQKYFKAQQAILGVVNGQVEEVYSGHNVVKAFNREA
VVLNDFNAANDKLYESAWKSQFLSGLMMPIMNFVGNLGYVAVAIVGSIFAANGTITIGDIQAFIQYVKNFTQPIQQLSQV
SNMLQSMAAAAERAFEFLNEPEEDQQADPSRRADPGCINGQVTFSHVRFGYTPDKTVIRDFSCEVKPGQKVAIVGPTGAG
KTTMVKLLMRFYDVDSGSITLNGHDVRDFDRSALREGFGMVLQDTWLFKGTIMENIRYGRLDATDEEVIAAAKAANADHF
IRTLPGGYQMELNEDASNVSQGQKQLLTIARTILADNRILILDEATSSVDTRTEQRIQTAMDRLMEGRTSFVIAHRLSTI
RDADLILVMRDGDIAEQGTHDQLIEAGGFYADLYNSQFEDVVE

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=109267 ACGHP1_RS09850 WP_390509238.1 1969979..1971790(+) (rcrQ) [Faecalibacterium sp. i21-0019-B1]
ATGCCAAGACCCGGACGCATGACGACCGAACGCGCCAAGGACTTCAAGGGCACCCTGCTGCAGCTTGTGCGCACCCTTGG
CCGCTACCGCCTTTCGCTCGTTACCGCCATTGTATTTGCCATTCTTTCTACCATCTTCAACATTGCAGGCCCCAAGGTGC
TGGCAAAGGCCACCACGGCTCTTGCCACCGGCTGGATCGCCAAGCTGCGCGGCACCGGCAGCATCGACTTTGTGTATATC
GGCCGCATCCTGCTGTTTTTGCTGGGCATGTACCTGCTGAGCAGCGCCTTCAGCTTTATTCAGGGCTGGCTCATGACCGG
CCTTTCCCAGAAAGTCTGCTACGACTTCCGCAAGCAGATCAGCGAAAAGATCAACCGCCTGCCCCTTGCCTACTTTGAAA
AGCGCACCGTGGGCGAGGTGCTGTCCCGCATCACCAACGATGTGGACACGCTGGGCCAGAGCCTGAACCAGAGCATCACC
CAGCTCATCACCAGTGTGACCACCATGATCGGCGTGCTGGTCATGATGCTGTCCATCAGCCCGAAGATGACCCTGATCGC
CCTGCTGATCCTGCCGGTCTCGCTGGTGCTGGTGCTCATCGTGGTCAAGTTCAGCCAGAAATACTTCAAGGCACAGCAGG
CCATCCTGGGCGTTGTAAACGGTCAGGTGGAAGAAGTCTACTCCGGCCACAACGTGGTCAAAGCCTTCAACCGCGAGGCC
GTGGTGCTGAACGACTTCAACGCCGCCAACGACAAGCTGTATGAATCTGCGTGGAAAAGCCAGTTCCTCTCCGGCCTGAT
GATGCCCATTATGAACTTTGTAGGCAATCTGGGCTATGTGGCAGTGGCCATCGTGGGCAGCATTTTTGCGGCAAACGGCA
CCATTACCATCGGTGACATTCAGGCCTTCATCCAGTACGTCAAGAACTTCACCCAGCCCATCCAGCAGCTTTCTCAGGTG
TCCAACATGCTGCAGAGCATGGCCGCTGCCGCTGAGCGGGCGTTCGAATTTCTGAACGAGCCGGAAGAGGATCAGCAGGC
AGACCCGTCCCGCCGGGCCGACCCCGGCTGCATCAACGGTCAGGTGACATTCAGTCATGTCCGCTTCGGCTACACCCCGG
ACAAGACCGTCATCCGCGATTTCAGCTGTGAGGTCAAGCCCGGCCAGAAGGTGGCTATCGTCGGCCCTACCGGCGCGGGC
AAAACTACCATGGTCAAGCTGCTCATGCGCTTCTATGATGTGGATTCCGGTTCCATCACCCTGAATGGCCACGATGTGCG
TGACTTTGACCGCAGCGCTCTGCGCGAGGGCTTCGGCATGGTGCTGCAGGACACATGGCTGTTCAAGGGCACCATCATGG
AGAACATCCGCTATGGCCGACTGGATGCTACCGACGAAGAAGTGATCGCCGCCGCCAAGGCTGCCAACGCTGACCACTTC
ATCCGCACCCTGCCCGGCGGCTACCAGATGGAGCTGAACGAAGACGCTTCCAACGTGAGTCAGGGCCAGAAGCAGCTGCT
CACCATCGCCCGCACCATTCTGGCAGATAACCGCATCCTGATTTTGGACGAGGCCACCAGCAGCGTGGATACCCGTACCG
AGCAGCGCATCCAGACCGCCATGGACCGCCTGATGGAGGGCCGCACCAGCTTTGTGATCGCACACCGTCTTTCCACCATC
CGGGATGCCGACCTCATCCTTGTAATGCGAGATGGCGATATTGCGGAGCAGGGCACCCACGACCAGCTGATCGAAGCAGG
CGGCTTCTACGCCGATCTGTACAACAGCCAGTTCGAGGACGTGGTGGAGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(34-313)

ABC transporter (ABC_tran)

(379-527)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.596

97.347

0.493

Multiple sequence alignment