Detailed information NTG1092385

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACL9SD_RS09155
• Genome accession: NZ_CP178914
• Coordinates: 1806796..1807575 (+)
• Length: 259 a.a.
• NCBI ID: WP_003181756.1
• Uniprot ID: A0A1Y0YKK2
• Organism: Bacillus paralicheniformis strain IFST-745
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1801796..1812575

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACL9SD_RS09135 (ACL9SD_09135)	trmFO	1802493..1803797 (+)	1305	WP_020451382.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACL9SD_RS09140 (ACL9SD_09140)	xerC	1803864..1804778 (+)	915	WP_020451383.1	tyrosine recombinase XerC	-
ACL9SD_RS09145 (ACL9SD_09145)	hslV	1804792..1805337 (+)	546	WP_080131369.1	ATP-dependent protease subunit HslV	-
ACL9SD_RS09150 (ACL9SD_09150)	hslU	1805354..1806757 (+)	1404	WP_020451385.1	HslU--HslV peptidase ATPase subunit	-
ACL9SD_RS09155 (ACL9SD_09155)	codY	1806796..1807575 (+)	780	WP_003181756.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACL9SD_RS09160 (ACL9SD_09160)	flgB	1807927..1808316 (+)	390	WP_080131370.1	flagellar basal body rod protein FlgB	-
ACL9SD_RS09165 (ACL9SD_09165)	flgC	1808316..1808768 (+)	453	WP_025811385.1	flagellar basal body rod protein FlgC	-
ACL9SD_RS09170 (ACL9SD_09170)	fliE	1808782..1809099 (+)	318	WP_020451389.1	flagellar hook-basal body complex protein FliE	-
ACL9SD_RS09175 (ACL9SD_09175)	fliF	1809150..1810751 (+)	1602	WP_020451390.1	flagellar basal-body MS-ring/collar protein FliF	-
ACL9SD_RS09180 (ACL9SD_09180)	fliG	1810765..1811781 (+)	1017	WP_020451391.1	flagellar motor switch protein FliG	-
ACL9SD_RS09185 (ACL9SD_09185)	fliH	1811765..1812532 (+)	768	WP_080131371.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29073.42 Da
• Isoelectric Point: 4.8196

>NTDB_id=1092385 ACL9SD_RS09155 WP_003181756.1 1806796..1807575(+) (codY) [Bacillus paralicheniformis strain IFST-745]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1092385 ACL9SD_RS09155 WP_003181756.1 1806796..1807575(+) (codY) [Bacillus paralicheniformis strain IFST-745]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTTGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGACTATACAAAAAGTCTGTTC
AACATTCCGGAAACTTCATCCAACCTTGACATTAACAGCGAATATACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACAGTCGTTCCGATCATCGGAGGAGGCGAAAGACTCGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTAGCCGAATATGGCGCAACGGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCTGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCGTTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAAGAGCTTGACGGAAATGAAGGTCTGCTTGTCGCAAGTAAAATTGCAGACCGCGTCGGCATCACTC
GCTCGGTCATTGTCAATGCGCTGCGCAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCATTAGGAATGAAAGGCACA
TACATTAAAGTCCTGAACAACAAATTTTTAATGGAATTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: A0A1Y0YKK2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	94.595	100	0.946
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467