Detailed information NTG1090982

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: ACLZ8F_RS05760
• Genome accession: NZ_CP178723
• Coordinates: 1222623..1225055 (+)
• Length: 810 a.a.
• NCBI ID: WP_002440136.1
• Uniprot ID: Q5HNT1
• Organism: Staphylococcus epidermidis strain 42.1-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1217623..1230055

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLZ8F_RS05735 (ACLZ8F_05735)	-	1217949..1218092 (+)	144	WP_001830746.1	SAS049 family protein	-
ACLZ8F_RS05740 (ACLZ8F_05740)	-	1218292..1219287 (-)	996	WP_001830781.1	LLM class flavin-dependent oxidoreductase	-
ACLZ8F_RS05745 (ACLZ8F_05745)	-	1219530..1220672 (+)	1143	WP_001830848.1	cysteine desulfurase family protein	-
ACLZ8F_RS05750 (ACLZ8F_05750)	mnmA	1220672..1221790 (+)	1119	WP_001830892.1	tRNA 2-thiouridine(34) synthase MnmA	-
ACLZ8F_RS05755 (ACLZ8F_05755)	-	1221953..1222621 (+)	669	WP_001832695.1	tetratricopeptide repeat protein	-
ACLZ8F_RS05760 (ACLZ8F_05760)	recD2	1222623..1225055 (+)	2433	WP_002440136.1	ATP-dependent RecD-like DNA helicase	Machinery gene
ACLZ8F_RS05765 (ACLZ8F_05765)	alaS	1225384..1228014 (+)	2631	WP_002440135.1	alanine--tRNA ligase	-
ACLZ8F_RS05770 (ACLZ8F_05770)	-	1228078..1228338 (+)	261	WP_001830883.1	IreB family regulatory phosphoprotein	-
ACLZ8F_RS05775 (ACLZ8F_05775)	ruvX	1228340..1228768 (+)	429	WP_001830837.1	Holliday junction resolvase RuvX	-
ACLZ8F_RS05780 (ACLZ8F_05780)	-	1228783..1229091 (+)	309	WP_001830855.1	DUF1292 domain-containing protein	-

Sequence

Protein

• Length: 810 a.a.
• Molecular weight: 91866.57 Da
• Isoelectric Point: 4.7006

>NTDB_id=1090982 ACLZ8F_RS05760 WP_002440136.1 1222623..1225055(+) (recD2) [Staphylococcus epidermidis strain 42.1-1]
MSDPTLFDYSMIKGTVDAILFQNTDNFYTVLKVDTIESNEKFDSMPTVVGFLPNVVEGDVYTFKGQVVQHPRYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQNIVNTLGENAINDILTRPEILESVPSLPKKKQKQIADQINANQESEKIM
IRLHDLGFGPKLSMAIYQFYMGDTLNVLDKNPYQLVYDIKGIGFNKADQLARNVGIEPHSPERLKAALLFTLEEECIKQG
HTYLPRTIVIETTQNLLNEDIEKPIETEQLLEIIDVLSEEKKLISEADQVSIPSLYYSELKSVQNLYRIKTNTSKLKEIE
QSDLQIHIGDIESQNEVNYSASQKEALETAINSKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYNEDDYPVVLA
APTGRASKRLHESTGLEAMTIHRLIGWNQDTQPQDILENEINARLIIIDEMSMVDTWLFHQFLSAVPLEAQIVFVGDEDQ
LPSVGPGQVFKDLIDSEIIPRVNLTEVYRQQDGSSIIDLAHRMKLNEPIDITKRYHDRSFIRCGTNQIPDVVDKVVKSAV
AKGYDMSDIQVLAPMYKGNAGIKRLNQVLQSILNPKQQDDREIEFGEAVFRKGDKVLQLVNRPNDNIFNGDIGIIVGIFW
AKENALNKDVLVVDFEGNEITFTKQDLMELTHAYCTSIHKSQGSEFPIVIMPIVRQYYRMLQRPILYTGLTRAKQSLVLL
GEQEAFDIGLKTNGQIRLTQLNDLLKSYFGQNKNNLTTNKQTINEQKENNNHLDLKNEKENDIQLNESTIFQIDPMINMG
EMTPYDFVER

Nucleotide

• Length: 2433 bp

>NTDB_id=1090982 ACLZ8F_RS05760 WP_002440136.1 1222623..1225055(+) (recD2) [Staphylococcus epidermidis strain 42.1-1]
ATGTCTGACCCTACACTTTTTGATTATTCAATGATCAAAGGTACAGTTGATGCTATTTTATTTCAAAATACGGATAATTT
TTATACTGTTCTAAAAGTAGATACTATAGAATCAAATGAAAAATTTGATAGTATGCCAACTGTGGTAGGGTTTCTTCCCA
ATGTAGTTGAAGGCGATGTTTATACTTTTAAAGGGCAAGTCGTACAACATCCACGTTATGGTAAGCAATTAAAGGCTGAA
ACATTTGAAAAAGAATTACCTCAAACTAAAGAAGCCATTATTAGTTACTTATCAAGTGATTTATTTAAAGGCATCGGTAA
AAAAACGGCTCAAAACATTGTAAATACACTAGGTGAAAATGCTATAAATGATATTTTAACTCGTCCAGAAATCTTAGAAA
GTGTACCTAGTTTACCAAAGAAGAAACAAAAGCAAATTGCTGATCAGATTAATGCAAACCAAGAATCTGAGAAAATTATG
ATACGTTTACACGACCTAGGGTTTGGTCCGAAATTATCAATGGCTATATATCAGTTCTATATGGGTGATACTTTAAATGT
CTTAGATAAAAATCCTTACCAATTAGTATATGACATTAAAGGTATTGGTTTTAATAAGGCTGACCAACTTGCTCGAAATG
TCGGTATTGAGCCACATTCACCTGAAAGATTAAAAGCAGCATTATTATTTACGTTAGAAGAAGAATGTATCAAACAAGGA
CATACATATCTACCTCGTACAATTGTTATAGAAACAACACAAAATTTACTCAATGAAGATATTGAGAAACCAATTGAAAC
AGAGCAATTACTAGAAATCATTGACGTTTTATCAGAAGAGAAAAAATTAATATCTGAAGCTGATCAGGTATCAATTCCAA
GTTTATACTATTCAGAATTGAAAAGTGTGCAAAACTTATACCGAATTAAAACAAACACATCTAAATTAAAAGAAATAGAA
CAGTCTGATTTACAAATACATATTGGTGATATTGAGTCACAAAATGAGGTTAATTACTCTGCCTCTCAAAAAGAAGCGCT
TGAAACAGCAATAAATTCTAAAATTATGCTTTTAACTGGTGGTCCGGGTACCGGTAAAACCACAGTCATTAAAGGTATAG
TTGAATTATATGCAGAAATACATGGGCTCTCGCTCGATTATGATGATTACAATGAAGATGATTATCCAGTAGTGTTAGCT
GCACCCACTGGTCGTGCTTCTAAGCGCCTTCACGAATCGACAGGTTTAGAAGCAATGACAATTCATCGTTTAATCGGTTG
GAACCAAGATACACAACCACAGGATATTTTAGAAAATGAGATCAATGCAAGACTCATTATCATCGATGAAATGTCAATGG
TAGATACTTGGTTGTTCCATCAATTTTTAAGCGCTGTGCCTTTAGAAGCACAAATTGTATTTGTCGGAGATGAAGATCAG
TTACCATCAGTAGGTCCAGGACAGGTATTTAAAGACCTTATTGATTCTGAAATAATACCGCGTGTTAATCTTACCGAAGT
ATATCGTCAGCAAGATGGTTCCAGTATTATTGACTTAGCTCACCGTATGAAATTAAATGAACCTATCGATATTACTAAAC
GTTATCATGATCGTAGTTTTATTCGTTGTGGTACGAATCAAATTCCAGACGTTGTTGATAAAGTAGTTAAAAGCGCTGTA
GCTAAAGGCTATGATATGAGTGATATACAAGTTTTGGCTCCTATGTATAAAGGTAACGCTGGTATTAAGAGACTTAACCA
AGTTCTACAATCTATTCTTAATCCGAAGCAACAAGATGATCGTGAAATAGAATTTGGTGAAGCTGTGTTTAGAAAAGGGG
ATAAAGTACTTCAGTTAGTTAATCGACCTAATGATAATATATTTAATGGGGATATAGGTATAATAGTAGGTATATTTTGG
GCCAAAGAAAATGCTCTAAATAAGGATGTGTTAGTTGTAGATTTTGAAGGTAATGAAATTACATTTACTAAACAAGATTT
AATGGAACTAACACATGCATATTGTACATCTATCCATAAATCACAAGGTTCAGAATTTCCTATTGTAATTATGCCTATTG
TTAGACAATATTATAGGATGTTACAACGTCCCATTCTTTATACAGGATTAACTAGAGCTAAACAATCACTTGTTTTGCTT
GGTGAACAAGAAGCATTTGATATAGGTTTAAAAACAAATGGACAAATACGATTAACGCAATTAAATGATTTGTTAAAATC
GTATTTTGGACAAAACAAAAATAATTTAACTACAAATAAACAAACGATTAACGAACAAAAAGAAAATAACAATCATCTGG
ATTTGAAAAATGAAAAAGAAAATGATATCCAATTAAACGAGTCGACAATTTTCCAAATCGATCCAATGATTAATATGGGG
GAAATGACGCCATATGACTTCGTTGAACGTTGA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-720)

• AAA domain (AAA_30) (339-545)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

3D structure

• AlphaFold DB: Q5HNT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	49.134	99.753	0.49