Detailed information NTG1090919

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACL6EO_RS08485
• Genome accession: NZ_CP178718
• Coordinates: 1668789..1669568 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain SY1154
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1663789..1674568

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACL6EO_RS08465 (ACL6EO_08465)	trmFO	1664476..1665783 (+)	1308	WP_029973471.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACL6EO_RS08470 (ACL6EO_08470)	xerC	1665853..1666770 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
ACL6EO_RS08475 (ACL6EO_08475)	hslV	1666786..1667331 (+)	546	WP_014417767.1	ATP-dependent protease subunit HslV	-
ACL6EO_RS08480 (ACL6EO_08480)	hslU	1667348..1668751 (+)	1404	WP_061862191.1	HslU--HslV peptidase ATPase subunit	-
ACL6EO_RS08485 (ACL6EO_08485)	codY	1668789..1669568 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACL6EO_RS08490 (ACL6EO_08490)	flgB	1669922..1670311 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ACL6EO_RS08495 (ACL6EO_08495)	flgC	1670311..1670763 (+)	453	WP_413385556.1	flagellar basal body rod protein FlgC	-
ACL6EO_RS08500 (ACL6EO_08500)	fliE	1670774..1671094 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ACL6EO_RS08505 (ACL6EO_08505)	fliF	1671137..1672747 (+)	1611	WP_003154257.1	flagellar basal-body MS-ring/collar protein FliF	-
ACL6EO_RS08510 (ACL6EO_08510)	fliG	1672760..1673776 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACL6EO_RS08515 (ACL6EO_08515)	fliH	1673769..1674524 (+)	756	WP_413385558.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1090919 ACL6EO_RS08485 WP_003154263.1 1668789..1669568(+) (codY) [Bacillus velezensis strain SY1154]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1090919 ACL6EO_RS08485 WP_003154263.1 1668789..1669568(+) (codY) [Bacillus velezensis strain SY1154]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACATCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471