Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ACL6ER_RS13415 Genome accession   NZ_CP178717
Coordinates   2681940..2684300 (-) Length   786 a.a.
NCBI ID   WP_119914087.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain SY1167     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2676940..2689300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6ER_RS13395 (ACL6ER_13395) - 2677017..2678570 (+) 1554 WP_268281792.1 SH3 domain-containing protein -
  ACL6ER_RS13400 (ACL6ER_13400) dtd 2678595..2679035 (-) 441 WP_003237504.1 D-aminoacyl-tRNA deacylase -
  ACL6ER_RS13405 (ACL6ER_13405) relA 2679048..2681252 (-) 2205 WP_003237506.1 GTP diphosphokinase -
  ACL6ER_RS13410 (ACL6ER_13410) - 2681422..2681934 (-) 513 WP_003237508.1 adenine phosphoribosyltransferase -
  ACL6ER_RS13415 (ACL6ER_13415) recJ 2681940..2684300 (-) 2361 WP_119914087.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ACL6ER_RS13420 (ACL6ER_13420) - 2684367..2684690 (-) 324 WP_019259046.1 lipopolysaccharide assembly LapA domain-containing protein -
  ACL6ER_RS13425 (ACL6ER_13425) - 2684767..2685264 (-) 498 WP_003237514.1 cation:proton antiporter regulatory subunit -
  ACL6ER_RS13430 (ACL6ER_13430) - 2685419..2685589 (-) 171 Protein_2640 hypothetical protein -
  ACL6ER_RS13435 (ACL6ER_13435) secDF 2685740..2687953 (-) 2214 WP_413324904.1 protein translocase subunit SecDF -
  ACL6ER_RS13440 (ACL6ER_13440) comN 2687992..2688288 (-) 297 WP_003222684.1 post-transcriptional regulator ComN -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88197.76 Da        Isoelectric Point: 5.0087

>NTDB_id=1090860 ACL6ER_RS13415 WP_119914087.1 2681940..2684300(-) (recJ) [Bacillus inaquosorum strain SY1167]
MLASKMRWEIQRPDQDKVKSLTEQLHITPLVASLLVKRGFDTAESAKLFLHTKDADFYDPFEMKGMKEAAERIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFKEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKEL
GLDVIITDHHEPGPELPDVHAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPDELLDLAAIGTIADLVPLHDENRLI
ATLGLERLRRTTRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLMSEDPFEAEELAAEIDQLNKE
RQKMVSKMTDEAIEMVEQQGLNQTAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLNAEDVPDLRNRLNEIANNTLTEEDFIPVQEVDLVCDVEDITVESITEMNQLSPFGMLN
PKPHVLVENAVLEDVRKIGANKNHVKMTVRNESSQLDCVGFNKGELEEGIVPGSRISIVGEMSINEWNNRKKPQLMIKDA
AVSEWQLFDLRGKRMWEDTVSALPSAKRAIVSFKEDSTTLLQTEDLRREVHVISSVDQAKAFDLDGAYIVLLDPPPSLDM
LARLLEGKAPERIYFIFLNHEDHFLSTFPARDHFKWYYAFLLKRGAFDVKKHGSELARHKGWSVETINFMTKVFFDLGFV
KIENGVLSVVSGVKKRDLTDSQTYQEKQQLMELDQKLNYSSAEELKEWLNKLMKQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=1090860 ACL6ER_RS13415 WP_119914087.1 2681940..2684300(-) (recJ) [Bacillus inaquosorum strain SY1167]
ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGCGACCAGATCAGGATAAGGTCAAATCACTCACAGAACAATTGCATAT
AACACCTCTTGTTGCGTCCCTGCTTGTAAAAAGAGGCTTTGATACGGCAGAAAGCGCAAAGCTGTTTTTACATACAAAGG
ATGCCGATTTTTATGACCCTTTTGAAATGAAGGGCATGAAAGAAGCGGCAGAGCGTATAAAACAGGCGATTTCACAACAA
GAACAGATTATGATATATGGCGATTATGACGCCGATGGAGTTACCAGTACGTCAGTGATGCTGCACACACTGCAAAAGCT
GTCGGCTCAAGTTGATTTTTATATACCTGACCGCTTTAAAGAAGGATATGGCCCTAATGAACAGGCGTTCCGTTCGATTA
AAGAACGGGGCTTCTCTCTGATTATTACGGTTGATACAGGAATTGCCGCTGTGCATGAAGCAAAGGTGGCAAAGGAACTT
GGGCTGGATGTCATTATAACCGATCACCATGAGCCGGGACCGGAGCTCCCGGATGTTCACGCGATCGTCCACCCGAAGCA
GCCAGGCTGCACCTACCCGTTTAAAGAATTGGCCGGGGTCGGAGTCGCGTTTAAGCTTGCTCACGCTTTATTGGGCGAAC
TTCCAGATGAACTGCTTGACTTGGCGGCAATCGGTACTATTGCCGATCTTGTCCCGCTGCATGACGAAAACAGATTAATT
GCAACACTAGGACTTGAAAGGCTTCGGCGGACGACTCGGCTGGGTTTAAAAGAGCTGATCAAGCTGTCAGGCGGGGACAT
CGGAGAAGCGAACGAAGAAACAGTCGGTTTCCAGCTTGCACCAAGGCTGAATGCCGTCGGAAGAATTGAACAGGCTGATC
CCGCTGTTCATTTGCTCATGTCAGAGGATCCGTTTGAAGCGGAAGAGCTTGCCGCTGAAATTGATCAGCTGAACAAAGAA
CGCCAAAAGATGGTCAGCAAAATGACGGATGAAGCGATTGAAATGGTTGAACAGCAAGGTCTCAATCAAACTGCAATCGT
CGTGGCCAAAGCCGGGTGGAATCCGGGAGTCGTCGGGATTGTGGCTTCAAAGCTAGTGGACCGTTTTTACAGACCGGCCA
TTGTGCTCGGCATTGATGAAGAAAAAGGGATTGCTAAAGGATCGGCCCGAAGCATCAGGGGCTTTAATTTATTCGAGAGC
CTTTCTGAATGCAGAGATATTCTCCCTCATTTCGGCGGCCATCCAATGGCGGCGGGGATGACGCTGAATGCCGAAGATGT
GCCGGATTTGCGTAACAGGCTGAATGAAATAGCGAACAACACGCTTACGGAAGAAGATTTTATTCCTGTACAGGAAGTCG
ATCTTGTCTGCGATGTCGAGGACATTACAGTTGAAAGCATCACAGAGATGAACCAGCTGTCCCCATTTGGCATGCTGAAC
CCGAAACCGCACGTTCTCGTAGAAAACGCTGTGCTGGAAGATGTCCGCAAGATCGGGGCTAATAAAAATCATGTCAAAAT
GACGGTCAGAAACGAGTCATCCCAGCTTGATTGCGTCGGTTTTAATAAAGGTGAGCTTGAAGAAGGCATCGTCCCGGGTT
CAAGAATTTCAATTGTCGGTGAGATGTCAATCAACGAATGGAACAATAGAAAAAAACCGCAGCTTATGATTAAGGATGCC
GCTGTTTCTGAATGGCAGCTGTTTGATTTAAGGGGAAAACGGATGTGGGAAGACACAGTTTCCGCCCTTCCATCTGCTAA
ACGGGCCATTGTCTCTTTCAAAGAAGACTCAACAACACTTCTTCAGACTGAAGACCTTCGCCGCGAAGTGCACGTCATTA
GCTCTGTAGATCAAGCGAAGGCGTTTGACCTCGATGGTGCATATATTGTATTACTTGATCCGCCGCCTTCGTTGGACATG
CTTGCACGTTTGCTGGAAGGCAAGGCGCCTGAGCGGATATATTTTATTTTTCTCAATCATGAGGACCACTTTTTATCAAC
TTTTCCCGCAAGAGACCACTTTAAATGGTATTATGCGTTCTTGCTGAAAAGAGGCGCTTTTGACGTAAAAAAACACGGTT
CAGAGCTTGCAAGACATAAAGGCTGGTCCGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTAGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTGGTTAGCGGAGTAAAGAAACGCGACTTAACAGACTCACAAACATATCAGGAGAA
ACAGCAGCTGATGGAACTGGATCAAAAGCTGAATTATTCTTCTGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AACAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

RecJ OB domain (RecJ_OB)

(453-559)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

97.328

100

0.973

Multiple sequence alignment