Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACL6ER_RS07780 Genome accession   NZ_CP178717
Coordinates   1562415..1563194 (+) Length   259 a.a.
NCBI ID   WP_003238551.1    Uniprot ID   A0A9W5PD99
Organism   Bacillus inaquosorum strain SY1167     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1557415..1568194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6ER_RS07760 (ACL6ER_07760) trmFO 1558108..1559415 (+) 1308 WP_225515049.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACL6ER_RS07765 (ACL6ER_07765) xerC 1559483..1560397 (+) 915 WP_003238557.1 tyrosine recombinase XerC -
  ACL6ER_RS07770 (ACL6ER_07770) clpQ 1560410..1560955 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  ACL6ER_RS07775 (ACL6ER_07775) hslU 1560972..1562375 (+) 1404 WP_019258392.1 HslU--HslV peptidase ATPase subunit -
  ACL6ER_RS07780 (ACL6ER_07780) codY 1562415..1563194 (+) 780 WP_003238551.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACL6ER_RS07785 (ACL6ER_07785) flgB 1563576..1563965 (+) 390 WP_060398625.1 flagellar basal body rod protein FlgB -
  ACL6ER_RS07790 (ACL6ER_07790) flgC 1563965..1564417 (+) 453 WP_003238546.1 flagellar basal body rod protein FlgC -
  ACL6ER_RS07795 (ACL6ER_07795) fliE 1564429..1564749 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  ACL6ER_RS07800 (ACL6ER_07800) fliF 1564795..1566390 (+) 1596 WP_413326840.1 flagellar basal-body MS-ring/collar protein FliF -
  ACL6ER_RS07805 (ACL6ER_07805) fliG 1566403..1567419 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  ACL6ER_RS07810 (ACL6ER_07810) fliH 1567412..1568164 (+) 753 WP_060398627.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29036.26 Da        Isoelectric Point: 4.7210

>NTDB_id=1090839 ACL6ER_RS07780 WP_003238551.1 1562415..1563194(+) (codY) [Bacillus inaquosorum strain SY1167]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFHDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1090839 ACL6ER_RS07780 WP_003238551.1 1562415..1563194(+) (codY) [Bacillus inaquosorum strain SY1167]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCAGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTGAGCCGCAGAGGCAAACTCCTTGGATATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AACGTCCCTGAAACATCTTCTAACTTGGACATTAATAGTGAATATACTGCTTTTCCTGTTGAGAATAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTACCGATCATCGGAGGCGGAGAAAGATTAGGAACCCTCATTCTTTCACGTTTACAGGATC
AATTTCATGATGATGATTTAATTCTCGCTGAATACGGTGCTACAGTTGTAGGCATGGAAATTCTGAGAGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCTCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAAGAGCTTGACGGAAACGAAGGCCTTCTCGTTGCAAGTAAAATCGCAGACCGCGTCGGCATTACCC
GCTCTGTGATTGTTAATGCACTCAGAAAGCTGGAAAGCGCCGGTGTCATCGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTCCTTAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment