Detailed information NTG1090555

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACL66B_RS08620
• Genome accession: NZ_CP178617
• Coordinates: 1651024..1651803 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis strain QXKL-3
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1646024..1656803

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACL66B_RS08600 (ACL66B_08600)	trmFO	1646717..1648024 (+)	1308	WP_015715883.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACL66B_RS08605 (ACL66B_08605)	xerC	1648092..1649006 (+)	915	WP_003231988.1	tyrosine recombinase XerC	-
ACL66B_RS08610 (ACL66B_08610)	clpQ	1649019..1649564 (+)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
ACL66B_RS08615 (ACL66B_08615)	hslU	1649581..1650984 (+)	1404	WP_041850833.1	HslU--HslV peptidase ATPase subunit	-
ACL66B_RS08620 (ACL66B_08620)	codY	1651024..1651803 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACL66B_RS08625 (ACL66B_08625)	flgB	1652183..1652572 (+)	390	WP_003245656.1	flagellar basal body rod protein FlgB	-
ACL66B_RS08630 (ACL66B_08630)	flgC	1652572..1653024 (+)	453	WP_021479294.1	flagellar basal body rod protein FlgC	-
ACL66B_RS08635 (ACL66B_08635)	fliE	1653035..1653355 (+)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
ACL66B_RS08640 (ACL66B_08640)	fliF	1653401..1655011 (+)	1611	WP_043940114.1	flagellar basal-body MS-ring/collar protein FliF	-
ACL66B_RS08645 (ACL66B_08645)	fliG	1655024..1656040 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
ACL66B_RS08650 (ACL66B_08650)	fliH	1656033..1656785 (+)	753	WP_032725764.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=1090555 ACL66B_RS08620 WP_003220850.1 1651024..1651803(+) (codY) [Bacillus subtilis strain QXKL-3]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1090555 ACL66B_RS08620 WP_003220850.1 1651024..1651803(+) (codY) [Bacillus subtilis strain QXKL-3]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCAGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467