Detailed information NTG1090471

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACKUFW_RS08065
• Genome accession: NZ_CP178610
• Coordinates: 1585765..1586544 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain GUMHT p116
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1580765..1591544

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKUFW_RS08045 (ACKUFW_08045)	trmFO	1581452..1582759 (+)	1308	WP_202735966.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACKUFW_RS08050 (ACKUFW_08050)	xerC	1582829..1583746 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
ACKUFW_RS08055 (ACKUFW_08055)	hslV	1583762..1584307 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
ACKUFW_RS08060 (ACKUFW_08060)	hslU	1584324..1585727 (+)	1404	WP_014305002.1	HslU--HslV peptidase ATPase subunit	-
ACKUFW_RS08065 (ACKUFW_08065)	codY	1585765..1586544 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACKUFW_RS08070 (ACKUFW_08070)	flgB	1586898..1587287 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ACKUFW_RS08075 (ACKUFW_08075)	flgC	1587287..1587739 (+)	453	WP_003154259.1	flagellar basal body rod protein FlgC	-
ACKUFW_RS08080 (ACKUFW_08080)	fliE	1587750..1588070 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ACKUFW_RS08085 (ACKUFW_08085)	fliF	1588113..1589723 (+)	1611	WP_202735967.1	flagellar basal-body MS-ring/collar protein FliF	-
ACKUFW_RS08090 (ACKUFW_08090)	fliG	1589736..1590752 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACKUFW_RS08095 (ACKUFW_08095)	fliH	1590745..1591500 (+)	756	WP_062623354.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1090471 ACKUFW_RS08065 WP_003154263.1 1585765..1586544(+) (codY) [Bacillus velezensis strain GUMHT p116]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1090471 ACKUFW_RS08065 WP_003154263.1 1585765..1586544(+) (codY) [Bacillus velezensis strain GUMHT p116]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471