Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ABFT42_RS13795 Genome accession   NZ_CP178596
Coordinates   2634467..2636827 (-) Length   786 a.a.
NCBI ID   WP_326333906.1    Uniprot ID   -
Organism   Bacillus mojavensis strain C3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2629467..2641827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT42_RS13775 (ABFT42_13775) - 2629544..2631097 (+) 1554 WP_326333907.1 SH3 domain-containing protein -
  ABFT42_RS13780 (ABFT42_13780) dtd 2631124..2631564 (-) 441 WP_229146639.1 D-aminoacyl-tRNA deacylase -
  ABFT42_RS13785 (ABFT42_13785) relA 2631577..2633781 (-) 2205 WP_413286440.1 GTP diphosphokinase -
  ABFT42_RS13790 (ABFT42_13790) - 2633949..2634461 (-) 513 WP_010335123.1 adenine phosphoribosyltransferase -
  ABFT42_RS13795 (ABFT42_13795) recJ 2634467..2636827 (-) 2361 WP_326333906.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ABFT42_RS13800 (ABFT42_13800) - 2636894..2637229 (-) 336 WP_326203158.1 lipopolysaccharide assembly LapA domain-containing protein -
  ABFT42_RS13805 (ABFT42_13805) - 2637306..2637803 (-) 498 WP_268448753.1 cation:proton antiporter regulatory subunit -
  ABFT42_RS13810 (ABFT42_13810) secDF 2637964..2640177 (-) 2214 WP_339177449.1 protein translocase subunit SecDF -
  ABFT42_RS13815 (ABFT42_13815) - 2640215..2640511 (-) 297 WP_010335127.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88420.96 Da        Isoelectric Point: 4.9815

>NTDB_id=1090329 ABFT42_RS13795 WP_326333906.1 2634467..2636827(-) (recJ) [Bacillus mojavensis strain C3]
MLASKMRWEIQRPDQEKVKSLTEQLDITPLVASLLVKRGFDTAESARLFLHTKDAEFYDPYEMKGMKEAVERIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFKEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKEL
GLDVIITDHHEPGPELPDVHAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGEWPDELLDLAAIGTIADLVPLHDENRLI
ATLGLEKLRRTNRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLMSEDQFEAEELAAEIDQLNKE
RQKMVSKMTDEAIEMVEQEGLTQTAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLNAEDVPELRNRLNEIADHTLTEEDFIPVQEVDLVCSVEDITVESITEMNLLSPFGMLN
PKPHVMVENAVLEDVRKIGANKNHVKMTIRNDSSQLDCVGFNKGELEENIVPGSKISIVGEMSINEWNNRKKPQLMIKDA
AVAEWQLFDLRGKRTWKDTVSALPSDKRVIVSFKEETKALLQSEDFRHDVHVISSEDQAKACELDNAYIVLLDSPPSLDM
LARLLEGKAPERIYFIFLNHEEHFLSSFPARDHFKWYYAFLLKRGTFDLNKHGSELARHKGWSVETINFMTKVFFDLGFV
KIENGVLSVISGAKKRDLTDSQTYQAKQQLMELDQKLNYSAAEELKEWLNKLMKQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=1090329 ABFT42_RS13795 WP_326333906.1 2634467..2636827(-) (recJ) [Bacillus mojavensis strain C3]
ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGAGACCAGATCAGGAAAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTTGCGTCGCTGCTTGTAAAAAGAGGCTTTGATACGGCAGAAAGCGCGAGACTGTTTTTACATACAAAGG
ATGCCGAATTCTATGATCCCTATGAGATGAAGGGGATGAAAGAAGCGGTTGAACGAATAAAACAGGCGATTTCACAACAA
GAACAGATTATGATATATGGCGATTATGATGCCGATGGAGTTACCAGTACGTCAGTGATGCTGCACACTTTGCAAAAGCT
GTCAGCGCAAGTTGATTTTTATATACCTGACCGGTTTAAAGAAGGCTACGGCCCCAATGAACAGGCGTTTCGTTCGATTA
AAGAACGAGGCTTCTCACTCATTATTACGGTTGATACGGGGATTGCCGCTGTCCATGAAGCGAAGGTAGCAAAGGAACTT
GGCTTAGATGTCATCATTACCGACCACCATGAGCCTGGACCAGAGCTTCCGGATGTTCATGCGATCGTTCACCCGAAGCA
GCCTGGCTGCACCTATCCTTTTAAGGAGCTTGCAGGAGTGGGAGTAGCGTTTAAGCTTGCCCACGCATTATTGGGCGAAT
GGCCAGATGAACTTCTTGACCTGGCGGCAATTGGCACCATTGCCGATCTAGTTCCGCTGCATGATGAAAACAGATTAATT
GCAACATTAGGTCTCGAAAAGCTCCGGCGGACGAACCGGCTTGGCTTAAAAGAGCTGATTAAGCTCTCAGGCGGAGACAT
CGGAGAAGCGAACGAAGAAACCGTCGGATTTCAGCTCGCACCGAGACTGAATGCAGTCGGAAGAATTGAACAGGCCGATC
CTGCTGTTCATCTGTTGATGTCAGAGGACCAGTTTGAAGCGGAAGAGCTTGCCGCTGAAATCGATCAGCTTAATAAAGAA
CGGCAAAAGATGGTCAGTAAAATGACGGATGAAGCGATTGAAATGGTTGAACAAGAAGGGCTTACTCAAACTGCAATTGT
CGTGGCAAAAGCAGGGTGGAATCCCGGAGTCGTCGGAATTGTAGCTTCAAAGCTTGTAGACCGTTTTTACCGCCCGGCCA
TTGTGCTTGGAATTGATGAAGAAAAAGGGATCGCCAAAGGTTCGGCACGAAGCATCAGGGGATTTAATTTGTTTGAAAGC
CTTTCTGAATGCAGGGATATTCTTCCGCACTTTGGAGGCCATCCAATGGCGGCTGGCATGACGCTGAATGCCGAGGATGT
GCCGGAATTGCGGAACAGGCTGAATGAGATAGCTGACCATACGCTTACGGAAGAAGATTTTATTCCTGTACAGGAAGTAG
ACCTCGTATGCAGCGTGGAGGACATTACGGTTGAAAGCATCACAGAGATGAATCTGCTTTCTCCCTTCGGCATGCTGAAC
CCGAAACCGCATGTGATGGTAGAAAACGCAGTGCTGGAAGATGTCCGCAAAATCGGGGCGAATAAAAATCATGTCAAAAT
GACGATTAGAAACGATTCCTCCCAGCTTGACTGCGTCGGTTTCAATAAAGGCGAGCTTGAGGAAAATATTGTGCCCGGCT
CAAAAATTTCGATTGTTGGCGAAATGTCGATCAACGAATGGAATAATAGAAAAAAACCGCAGCTGATGATCAAGGATGCG
GCTGTTGCTGAATGGCAGCTGTTTGACTTAAGAGGAAAACGCACGTGGAAAGATACGGTTTCCGCCCTTCCGTCTGATAA
ACGAGTCATTGTCTCCTTCAAAGAAGAAACCAAAGCGCTTCTTCAGTCTGAAGATTTTCGCCATGACGTGCACGTTATCA
GTTCTGAAGACCAAGCGAAGGCATGTGAACTTGACAATGCATATATTGTATTACTGGATTCTCCGCCTTCGCTGGACATG
CTCGCACGTTTGCTGGAAGGCAAAGCGCCTGAGCGGATTTATTTCATCTTTCTCAATCATGAGGAACACTTTTTATCATC
TTTTCCGGCAAGAGACCACTTTAAATGGTATTATGCATTCTTGCTGAAAAGAGGCACTTTTGACTTGAATAAACACGGCT
CAGAGCTTGCGAGGCATAAAGGCTGGTCGGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTAATAAGCGGAGCGAAAAAACGCGATTTAACAGACTCGCAAACATATCAAGCAAA
ACAGCAGCTGATGGAGCTGGATCAAAAGCTGAATTATTCTGCGGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AACAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHHA1 domain (DHHA1)

(315-437)

RecJ OB domain (RecJ_OB)

(453-559)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

93.511

100

0.935

Multiple sequence alignment