Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ABFT42_RS08765 Genome accession   NZ_CP178596
Coordinates   1717252..1718031 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus mojavensis strain C3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1712252..1723031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT42_RS08745 (ABFT42_08745) trmFO 1712946..1714253 (+) 1308 WP_010334239.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ABFT42_RS08750 (ABFT42_08750) xerC 1714321..1715235 (+) 915 WP_286058542.1 tyrosine recombinase XerC -
  ABFT42_RS08755 (ABFT42_08755) clpQ 1715248..1715793 (+) 546 WP_010334241.1 ATP-dependent protease subunit ClpQ -
  ABFT42_RS08760 (ABFT42_08760) hslU 1715810..1717213 (+) 1404 WP_029441258.1 HslU--HslV peptidase ATPase subunit -
  ABFT42_RS08765 (ABFT42_08765) codY 1717252..1718031 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ABFT42_RS08770 (ABFT42_08770) flgB 1718414..1718803 (+) 390 WP_326227034.1 flagellar basal body rod protein FlgB -
  ABFT42_RS08775 (ABFT42_08775) flgC 1718803..1719255 (+) 453 WP_010334245.1 flagellar basal body rod protein FlgC -
  ABFT42_RS08780 (ABFT42_08780) fliE 1719266..1719586 (+) 321 WP_029441259.1 flagellar hook-basal body complex protein FliE -
  ABFT42_RS08785 (ABFT42_08785) fliF 1719632..1721242 (+) 1611 WP_326227035.1 flagellar basal-body MS-ring/collar protein FliF -
  ABFT42_RS08790 (ABFT42_08790) fliG 1721255..1722271 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  ABFT42_RS08795 (ABFT42_08795) fliH 1722264..1723016 (+) 753 WP_168747821.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=1090308 ABFT42_RS08765 WP_003220850.1 1717252..1718031(+) (codY) [Bacillus mojavensis strain C3]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1090308 ABFT42_RS08765 WP_003220850.1 1717252..1718031(+) (codY) [Bacillus mojavensis strain C3]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTTAACTTTAAAGAAAT
GGCGGAAACGCTTCGGGATGTAATTGATTCCAATATTTTCGTTGTGAGCCGCAGAGGAAAACTTCTCGGGTACTCTATCA
ACCAGCAAATTGAAAATGACCGCATGAAAAAAATGCTTGAGGATCGCCAATTCCCAGAGGAATATACGAAGAATCTGTTC
AACGTCCCTGAAACATCTTCTAACCTGGATATCAATAGTGAGTATACTGCTTTTCCTGTTGAAAACAGAGACTTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGAGAAAGATTAGGTACACTCATTCTTTCACGTTTACAGGATC
AGTTTAATGATGATGATTTAATTCTTGCTGAATACGGCGCTACAGTTGTCGGAATGGAAATTCTGAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCAAGAAGCAAAGCAGTCGTACAAATGGCAATCAGCTCTCTTTCTTATAGTGAGCTTGAAGCAAT
TGAACACATCTTTGAAGAGCTTGACGGAAACGAAGGCCTTCTTGTTGCAAGTAAGATTGCAGACCGTGTCGGCATTACTC
GCTCAGTTATTGTTAACGCACTCAGAAAGCTTGAAAGTGCTGGGGTAATTGAGTCAAGATCATTAGGCATGAAGGGTACT
TATATCAAAGTGCTGAACAACAAATTCCTGATTGAATTAGAAAATCTGAAATCGCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment