Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACJGE3_RS03090 Genome accession   NZ_CP178562
Coordinates   627294..628073 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain JT-3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 622294..633073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJGE3_RS03070 (ACJGE3_03070) trmFO 622981..624288 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACJGE3_RS03075 (ACJGE3_03075) xerC 624358..625275 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  ACJGE3_RS03080 (ACJGE3_03080) hslV 625291..625836 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  ACJGE3_RS03085 (ACJGE3_03085) hslU 625853..627256 (+) 1404 WP_413354262.1 HslU--HslV peptidase ATPase subunit -
  ACJGE3_RS03090 (ACJGE3_03090) codY 627294..628073 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACJGE3_RS03095 (ACJGE3_03095) flgB 628427..628816 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  ACJGE3_RS03100 (ACJGE3_03100) flgC 628816..629268 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  ACJGE3_RS03105 (ACJGE3_03105) fliE 629279..629599 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  ACJGE3_RS03110 (ACJGE3_03110) fliF 629642..631252 (+) 1611 WP_062623353.1 flagellar basal-body MS-ring/collar protein FliF -
  ACJGE3_RS03115 (ACJGE3_03115) fliG 631265..632281 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  ACJGE3_RS03120 (ACJGE3_03120) fliH 632274..633029 (+) 756 WP_070081820.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=1090147 ACJGE3_RS03090 WP_003154263.1 627294..628073(+) (codY) [Bacillus velezensis strain JT-3]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1090147 ACJGE3_RS03090 WP_003154263.1 627294..628073(+) (codY) [Bacillus velezensis strain JT-3]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACTGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment