Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACLZ2J_RS08735 Genome accession   NZ_CP178514
Coordinates   1669186..1669965 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain BS18-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1664186..1674965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLZ2J_RS08715 trmFO 1664879..1666186 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACLZ2J_RS08720 xerC 1666254..1667168 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  ACLZ2J_RS08725 clpQ 1667181..1667726 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  ACLZ2J_RS08730 hslU 1667743..1669146 (+) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  ACLZ2J_RS08735 codY 1669186..1669965 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACLZ2J_RS08740 flgB 1670345..1670734 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  ACLZ2J_RS08745 flgC 1670734..1671186 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  ACLZ2J_RS08750 fliE 1671197..1671517 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  ACLZ2J_RS08755 fliF 1671563..1673173 (+) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  ACLZ2J_RS08760 fliG 1673186..1674202 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  ACLZ2J_RS08765 fliH 1674195..1674947 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=1089800 ACLZ2J_RS08735 WP_003220850.1 1669186..1669965(+) (codY) [Bacillus subtilis strain BS18-1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1089800 ACLZ2J_RS08735 WP_003220850.1 1669186..1669965(+) (codY) [Bacillus subtilis strain BS18-1]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment