Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ACE2AB_RS01775 Genome accession   NZ_CP178406
Coordinates   383332..383973 (+) Length   213 a.a.
NCBI ID   WP_000201228.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain L4773hy     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 378332..388973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE2AB_RS01755 (ACE2AB_01755) - 378380..378712 (+) 333 WP_000169602.1 hypothetical protein -
  ACE2AB_RS01760 (ACE2AB_01760) - 378715..379539 (+) 825 WP_096877324.1 putative RNA methyltransferase -
  ACE2AB_RS01765 (ACE2AB_01765) ponA 379557..382112 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  ACE2AB_RS01770 (ACE2AB_01770) pilM 382274..383332 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  ACE2AB_RS01775 (ACE2AB_01775) pilN 383332..383973 (+) 642 WP_000201228.1 PilN domain-containing protein Machinery gene
  ACE2AB_RS01780 (ACE2AB_01780) pilO 383970..384710 (+) 741 WP_000076106.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACE2AB_RS01785 (ACE2AB_01785) pilP 384721..385248 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  ACE2AB_RS01790 (ACE2AB_01790) pilQ 385311..387476 (+) 2166 WP_001017034.1 type IV pilus secretin PilQ Machinery gene
  ACE2AB_RS01795 (ACE2AB_01795) aroK 387488..388057 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24005.32 Da        Isoelectric Point: 5.3968

>NTDB_id=1089494 ACE2AB_RS01775 WP_000201228.1 383332..383973(+) (pilN) [Acinetobacter baumannii strain L4773hy]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKSASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1089494 ACE2AB_RS01775 WP_000201228.1 383332..383973(+) (pilN) [Acinetobacter baumannii strain L4773hy]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGTCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.596

97.653

0.709

Multiple sequence alignment