Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACLRDL_RS00850 Genome accession   NZ_CP178387
Coordinates   171755..172615 (+) Length   286 a.a.
NCBI ID   WP_080115518.1    Uniprot ID   -
Organism   Vibrio cholerae isolate CTMA_1842     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 166755..177615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLRDL_RS00830 (ACLRDL_00830) greB 167284..167766 (-) 483 WP_000850492.1 transcription elongation factor GreB -
  ACLRDL_RS00835 (ACLRDL_00835) - 168011..170332 (+) 2322 WP_000030094.1 Tex family protein -
  ACLRDL_RS00840 (ACLRDL_00840) - 170427..170897 (-) 471 WP_000961393.1 hypothetical protein -
  ACLRDL_RS00845 (ACLRDL_00845) bioH 171058..171819 (-) 762 WP_001240445.1 pimeloyl-ACP methyl ester esterase BioH -
  ACLRDL_RS00850 (ACLRDL_00850) comF 171755..172615 (+) 861 WP_080115518.1 ComF family protein Machinery gene
  ACLRDL_RS00855 (ACLRDL_00855) nfuA 172703..173290 (+) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  ACLRDL_RS00860 (ACLRDL_00860) nudE 173429..173977 (+) 549 WP_000095812.1 ADP compounds hydrolase NudE -
  ACLRDL_RS00865 (ACLRDL_00865) cysQ 174000..174827 (+) 828 WP_096070303.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ACLRDL_RS00870 (ACLRDL_00870) - 174879..175637 (-) 759 WP_413084124.1 type II secretion system protein N -
  ACLRDL_RS00875 (ACLRDL_00875) - 175639..176136 (-) 498 WP_000661343.1 type II secretion system protein M -
  ACLRDL_RS00880 (ACLRDL_00880) gspL 176146..177357 (-) 1212 WP_001288756.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32514.44 Da        Isoelectric Point: 8.0588

>NTDB_id=1089372 ACLRDL_RS00850 WP_080115518.1 171755..172615(+) (comF) [Vibrio cholerae isolate CTMA_1842]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCVGDYRFPLSDTVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWLRGFNQSDLLARELANALNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1089372 ACLRDL_RS00850 WP_080115518.1 171755..172615(+) (comF) [Vibrio cholerae isolate CTMA_1842]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCACTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCAACTCTCACTCC
TGTTGACCAGTGCGGGCAGTGTTTGGGCCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTCCCAC
TCAGTGATACGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCCGCCCCTTTGCTGTGCAGCGTGCCACTGCATTGGCGGCGACGCTGGCTACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAGTTAGCCAATGCGCTGAACATTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGGCTCAGCAAGGCGCAGCGAATCCACAACCTACGTGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTTGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

98.601

100

0.986
  comF Vibrio campbellii strain DS40M4

46.639

83.217

0.388

Multiple sequence alignment