Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACLSIV_RS01960 Genome accession   NZ_CP178385
Coordinates   374550..375338 (+) Length   262 a.a.
NCBI ID   WP_061773740.1    Uniprot ID   A0A2A5SID2
Organism   Lactococcus raffinolactis strain GCULR     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 369550..380338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLSIV_RS01935 (ACLSIV_01935) - 370410..370676 (+) 267 WP_061773735.1 IreB family regulatory phosphoprotein -
  ACLSIV_RS01940 (ACLSIV_01940) ruvX 370673..371098 (+) 426 WP_096039966.1 Holliday junction resolvase RuvX -
  ACLSIV_RS01945 (ACLSIV_01945) - 371119..371442 (+) 324 WP_061773737.1 DUF1292 domain-containing protein -
  ACLSIV_RS01950 (ACLSIV_01950) - 371536..372780 (-) 1245 WP_412921826.1 MFS transporter -
  ACLSIV_RS01955 (ACLSIV_01955) - 373014..374444 (+) 1431 WP_082785334.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  ACLSIV_RS01960 (ACLSIV_01960) codY 374550..375338 (+) 789 WP_061773740.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACLSIV_RS01965 (ACLSIV_01965) aspS 375760..377523 (+) 1764 WP_061773741.1 aspartate--tRNA ligase -
  ACLSIV_RS01970 (ACLSIV_01970) gatC 377838..378131 (+) 294 WP_003140469.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  ACLSIV_RS01975 (ACLSIV_01975) gatA 378134..379582 (+) 1449 WP_061773742.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  ACLSIV_RS01980 (ACLSIV_01980) - 379585..380190 (+) 606 WP_061773743.1 NUDIX hydrolase N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 28809.99 Da        Isoelectric Point: 4.8340

>NTDB_id=1089279 ACLSIV_RS01960 WP_061773740.1 374550..375338(+) (codY) [Lactococcus raffinolactis strain GCULR]
MTTLLEKTRRITAILQEGLNNSSEELPYNGLSERLSAVIDCNSVVIDGKGVVLGYAMPYKTNNDRVEAMFDERKLSDEYV
QVASRTYDTEANLPADAMLSLYPQEVVKDHPHGKTTVAPIYGSGLRLGTFIIWRNEEAFSDDDLVLVELATTVIGIQLSN
LQIEKMEENIRKAAAVNMAVSTLSYSEMKAVKAILEELGGIEGRLTASVIADKIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVVNSGIYEKLEGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=1089279 ACLSIV_RS01960 WP_061773740.1 374550..375338(+) (codY) [Lactococcus raffinolactis strain GCULR]
ATGACTACTTTATTAGAAAAAACAAGAAGAATCACGGCGATTTTGCAAGAAGGACTCAATAATTCTAGCGAAGAATTACC
GTACAATGGCTTATCAGAACGCTTATCAGCGGTAATTGATTGTAACTCTGTTGTCATCGATGGCAAGGGTGTTGTGCTTG
GCTATGCCATGCCATACAAGACAAACAACGACCGTGTTGAAGCGATGTTTGATGAACGCAAGTTATCAGATGAGTACGTT
CAAGTCGCATCACGTACTTATGATACTGAAGCTAACTTACCTGCAGATGCGATGCTATCACTTTATCCACAAGAAGTTGT
CAAAGATCACCCGCATGGTAAAACAACAGTTGCACCGATTTATGGTAGTGGCTTGCGTTTAGGAACATTTATCATCTGGC
GCAATGAAGAAGCGTTTAGTGATGATGATCTTGTCTTGGTTGAATTGGCAACAACAGTTATCGGGATTCAATTGTCAAAT
CTTCAAATCGAGAAGATGGAAGAAAACATCCGTAAGGCGGCAGCAGTTAATATGGCAGTTAGCACACTTTCTTATTCTGA
AATGAAAGCTGTTAAAGCGATTCTTGAAGAATTAGGTGGTATCGAAGGCCGTTTGACAGCTTCAGTAATTGCTGATAAAA
TTGGTATTACACGTTCAGTGATCGTGAATGCTCTTCGTAAGCTAGAGTCAGCTGGGATTATCGAATCTCGTTCACTTGGC
ATGAAGGGAACTTACCTTAAAGTTGTCAATTCAGGTATTTATGAAAAACTTGAAGGTCGCAACTTTTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A5SID2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

69.847

100

0.698
  codY Bacillus subtilis subsp. subtilis str. 168

45.882

97.328

0.447

Multiple sequence alignment