Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   GT95_RS01075 Genome accession   NZ_CP008813
Coordinates   185055..185354 (+) Length   99 a.a.
NCBI ID   WP_025195478.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain C001     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 180055..190354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT95_RS01045 (GT95_01020) - 181924..182289 (+) 366 WP_000285373.1 DUF1033 family protein -
  GT95_RS01055 (GT95_01025) comGA 182461..183432 (+) 972 WP_069107363.1 competence type IV pilus ATPase ComGA Machinery gene
  GT95_RS01060 (GT95_01030) comGB 183326..184369 (+) 1044 WP_228322108.1 competence type IV pilus assembly protein ComGB Machinery gene
  GT95_RS01065 (GT95_01035) comGC/cglC 184366..184695 (+) 330 WP_000793380.1 competence type IV pilus major pilin ComGC Machinery gene
  GT95_RS01070 (GT95_01040) comGD 184670..185083 (+) 414 WP_017646959.1 competence type IV pilus minor pilin ComGD Machinery gene
  GT95_RS01075 (GT95_01045) comGE 185055..185354 (+) 300 WP_025195478.1 competence type IV pilus minor pilin ComGE Machinery gene
  GT95_RS01080 (GT95_01050) comGF 185308..185769 (+) 462 WP_001874060.1 competence type IV pilus minor pilin ComGF Machinery gene
  GT95_RS01085 (GT95_01055) comGG 185747..186118 (+) 372 WP_000601103.1 competence type IV pilus minor pilin ComGG Machinery gene
  GT95_RS01090 (GT95_01060) comGH 186233..187207 (+) 975 WP_001008568.1 class I SAM-dependent methyltransferase Machinery gene
  GT95_RS01095 (GT95_01065) - 187239..188432 (+) 1194 WP_000047537.1 acetate kinase -
  GT95_RS01100 (GT95_01070) - 188584..188790 (+) 207 WP_000798241.1 helix-turn-helix transcriptional regulator -
  GT95_RS01105 - 188849..188986 (+) 138 WP_079263416.1 hypothetical protein -
  GT95_RS01110 (GT95_01075) - 189089..189481 (+) 393 WP_001265365.1 hypothetical protein -
  GT95_RS01115 (GT95_01080) - 189550..190215 (+) 666 WP_000008107.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11210.27 Da        Isoelectric Point: 10.6118

>NTDB_id=108876 GT95_RS01075 WP_025195478.1 185055..185354(+) (comGE) [Streptococcus agalactiae strain C001]
MVTIVRKKIRAYILLESLVGLAILVTITSLVISEINRQQSHIARRQHEQEVLILARMAVQTDQKILEANGVNIRIEESKN
KIALFEGNKEILHVSKVKG

Nucleotide


Download         Length: 300 bp        

>NTDB_id=108876 GT95_RS01075 WP_025195478.1 185055..185354(+) (comGE) [Streptococcus agalactiae strain C001]
GTGGTAACTATCGTAAGAAAGAAAATTAGAGCCTATATTTTACTGGAAAGCCTAGTGGGATTAGCTATTTTAGTTACTAT
TACAAGTTTAGTAATAAGTGAAATCAATCGTCAACAATCTCATATTGCAAGAAGGCAACATGAGCAAGAAGTATTGATAT
TAGCTAGAATGGCTGTGCAAACTGATCAAAAAATATTAGAAGCAAATGGTGTTAATATTCGTATTGAAGAAAGTAAAAAT
AAAATTGCGCTCTTTGAAGGTAATAAGGAAATTTTGCACGTATCAAAAGTTAAGGGTTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

38.542

96.97

0.374
  comGE Streptococcus mutans UA159

38.542

96.97

0.374

Multiple sequence alignment