Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ACLUR6_RS01440 Genome accession   NZ_CP178250
Coordinates   313109..313750 (+) Length   213 a.a.
NCBI ID   WP_118978219.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ACI     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 308109..318750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLUR6_RS01420 (ACLUR6_01420) - 308157..308489 (+) 333 WP_000169599.1 DUF7709 family protein -
  ACLUR6_RS01425 (ACLUR6_01425) - 308492..309316 (+) 825 WP_002019666.1 putative RNA methyltransferase -
  ACLUR6_RS01430 (ACLUR6_01430) ponA 309334..311889 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  ACLUR6_RS01435 (ACLUR6_01435) pilM 312051..313109 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  ACLUR6_RS01440 (ACLUR6_01440) pilN 313109..313750 (+) 642 WP_118978219.1 PilN domain-containing protein Machinery gene
  ACLUR6_RS01445 (ACLUR6_01445) pilO 313747..314487 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACLUR6_RS01450 (ACLUR6_01450) pilP 314498..315025 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  ACLUR6_RS01455 (ACLUR6_01455) pilQ 315088..317253 (+) 2166 WP_031993779.1 type IV pilus secretin PilQ Machinery gene
  ACLUR6_RS01460 (ACLUR6_01460) aroK 317265..317834 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24030.42 Da        Isoelectric Point: 5.8601

>NTDB_id=1088677 ACLUR6_RS01440 WP_118978219.1 313109..313750(+) (pilN) [Acinetobacter baumannii strain ACI]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRNA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRIGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1088677 ACLUR6_RS01440 WP_118978219.1 313109..313750(+) (pilN) [Acinetobacter baumannii strain ACI]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTAATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAATCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709

Multiple sequence alignment