Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ACFCT9_RS03615 Genome accession   NZ_CP178241
Coordinates   757421..759832 (-) Length   803 a.a.
NCBI ID   WP_412520955.1    Uniprot ID   -
Organism   Staphylococcus simulans strain PFJB-50N     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 752421..764832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFCT9_RS03590 - 752499..753140 (-) 642 WP_412520946.1 O-methyltransferase -
  ACFCT9_RS03595 - 753384..753695 (-) 312 WP_412520948.1 DUF1292 domain-containing protein -
  ACFCT9_RS03600 ruvX 753720..754145 (-) 426 WP_412520949.1 Holliday junction resolvase RuvX -
  ACFCT9_RS03605 - 754149..754412 (-) 264 WP_412520951.1 IreB family regulatory phosphoprotein -
  ACFCT9_RS03610 alaS 754481..757111 (-) 2631 WP_412520953.1 alanine--tRNA ligase -
  ACFCT9_RS03615 recD2 757421..759832 (-) 2412 WP_412520955.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACFCT9_RS03620 - 759835..760503 (-) 669 WP_412520957.1 tetratricopeptide repeat protein -
  ACFCT9_RS03625 mnmA 760604..761716 (-) 1113 WP_412520959.1 tRNA 2-thiouridine(34) synthase MnmA -
  ACFCT9_RS03630 - 761719..762858 (-) 1140 WP_412520961.1 cysteine desulfurase family protein -
  ACFCT9_RS03635 - 763041..764045 (+) 1005 WP_412520962.1 LLM class flavin-dependent oxidoreductase -
  ACFCT9_RS03640 - 764136..764345 (-) 210 WP_412520963.1 CsbD family protein -

Sequence

Protein


Download         Length: 803 a.a.        Molecular weight: 90291.67 Da        Isoelectric Point: 4.5543

>NTDB_id=1088612 ACFCT9_RS03615 WP_412520955.1 757421..759832(-) (recD2) [Staphylococcus simulans strain PFJB-50N]
MENPTLFDYSMVKGTVEAILFQNKDNFYTVLKVDPIETNEDFDTMPTIVGFFPEIAEGDVYTFKGQAVTHPRYGKQLKAE
TFEKEVPQTKDAIISYLSSDLFKGIGKKTAENIVNTLGENTINKILDDRSVLEDVPNLSKKKQNQIADQIYSNQEVEKIM
IRLHDLGFGPKLAMNIYQVYQSDTIKTIEKNPYDLVYDVRGVGFHKADTLAKNLGIEYNAPERLKAGLLYTLEEECIKQG
HTFLPKGYVVETSLEMLSKGYEQSIDDSMLDKMILELTEESKLIEVDETLSIPSLYYSEVKSVQNLYRIVSHQSKLENIE
QSDLQINIGEIEEMNAVSYATSQKEALETAINSKVMLLTGGPGTGKTTVIKGIVELYAETHGLSLSYDDYQNDDYPIALA
APTGRAAKRLQESTGLEAMTIHRLIGWSQDTKPEDVLENEITAKLIIIDEMSMVDTWLFHQFLNAVPIDAQIILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQEGSSIIELAHKMKLGQPIDITERFHDRSFIPCSAEQIPDVVNKVVSSAV
KKGYDMSDIQVLAPMYRGSAGIKRLNKVLQDILNPKAEDAREIEFGEAVFRKGDKVLQLVNRPNDNIFNGDIGVIAGIFW
AKENELNKDILVVDFEGNEITFTKQDMMELTHAYCTSIHKAQGSEFPIVIMPIVKQYYRMLQRPIIYTGLTRAKQSLVFL
GDSQAFDIGMKTHGQVRMTRLAQLLRDYFGTDDEANANKNEGQNDSAQTAAAQHLVELTEDTIYEIDPMIGMGNVTPYTF
NQA

Nucleotide


Download         Length: 2412 bp        

>NTDB_id=1088612 ACFCT9_RS03615 WP_412520955.1 757421..759832(-) (recD2) [Staphylococcus simulans strain PFJB-50N]
TTGGAGAACCCTACATTGTTTGACTATTCTATGGTCAAAGGGACAGTAGAAGCAATCTTATTTCAAAATAAAGACAATTT
CTATACTGTATTGAAAGTAGATCCGATTGAAACCAATGAAGATTTTGATACAATGCCTACAATTGTGGGGTTCTTTCCTG
AAATTGCGGAAGGCGATGTCTATACATTCAAAGGGCAAGCGGTGACACATCCGAGATATGGTAAACAACTAAAAGCGGAA
ACGTTTGAAAAAGAAGTTCCACAAACGAAAGATGCGATTATCAGCTATTTATCCAGTGATTTATTTAAAGGGATTGGTAA
AAAAACAGCTGAAAACATTGTGAATACCTTAGGTGAGAACACCATTAATAAAATATTGGATGACCGCTCTGTATTAGAAG
ATGTGCCAAATCTTTCTAAAAAGAAACAAAATCAAATTGCGGATCAAATATACAGTAACCAAGAAGTAGAAAAAATTATG
ATTCGACTACATGATTTAGGCTTTGGTCCTAAACTTGCGATGAATATTTATCAAGTTTATCAAAGCGATACCATTAAAAC
GATAGAGAAAAATCCTTATGACCTTGTTTATGACGTACGTGGTGTCGGCTTTCATAAAGCAGATACCTTAGCCAAAAATT
TAGGCATCGAATATAATGCGCCTGAACGTTTAAAAGCAGGATTGCTTTATACACTAGAGGAAGAATGTATTAAGCAAGGT
CACACGTTCTTGCCAAAAGGTTATGTCGTAGAAACGTCATTAGAGATGTTAAGTAAGGGTTATGAACAATCAATTGATGA
CAGTATGCTAGATAAAATGATACTTGAGTTAACAGAAGAAAGTAAGCTGATTGAAGTGGATGAAACACTCTCAATCCCAA
GTTTATATTATTCAGAAGTTAAAAGTGTCCAAAATTTATATCGTATTGTTTCACATCAATCAAAACTAGAGAATATTGAA
CAATCAGATTTACAAATCAATATCGGTGAAATTGAAGAAATGAATGCGGTCAGCTATGCGACGTCACAAAAAGAAGCACT
GGAAACGGCAATTAACTCTAAAGTGATGTTGTTGACGGGTGGTCCAGGTACAGGTAAAACAACAGTCATCAAAGGTATAG
TAGAACTCTACGCAGAAACGCATGGGTTATCGCTCTCTTATGATGACTATCAAAATGACGATTATCCGATTGCCCTTGCT
GCACCTACGGGCAGAGCTGCCAAGCGCCTTCAAGAATCAACGGGTCTAGAAGCAATGACGATTCATCGATTGATTGGTTG
GAGTCAGGATACGAAACCTGAAGATGTGCTAGAAAATGAAATTACCGCAAAATTGATTATTATTGATGAAATGTCGATGG
TCGATACATGGTTGTTCCATCAATTCTTAAATGCGGTGCCGATTGATGCGCAAATTATTCTCGTCGGCGACGAAGACCAA
TTACCATCTGTTGGTCCTGGCCAAGTATTTAAAGATTTAATTGACTCAAAAGTCATTCCGCGTGTCAATCTGACTGAAGT
TTATCGACAGCAAGAAGGTTCTAGTATTATCGAACTTGCCCACAAAATGAAACTGGGACAGCCGATTGATATTACTGAAC
GCTTTCATGACCGCAGCTTTATTCCTTGTTCAGCTGAACAAATACCAGATGTAGTGAATAAAGTTGTCAGCTCAGCAGTG
AAAAAAGGCTATGATATGAGTGATATACAAGTATTAGCACCGATGTATAGAGGCAGTGCGGGCATTAAGCGTTTAAATAA
AGTGTTGCAAGATATCTTGAATCCTAAAGCAGAAGATGCGAGGGAGATAGAATTTGGAGAAGCGGTCTTTAGAAAAGGTG
ATAAAGTCTTACAACTTGTTAACCGCCCAAATGATAATATCTTCAATGGAGACATCGGTGTTATTGCAGGTATCTTTTGG
GCCAAGGAGAATGAGCTCAATAAAGATATTCTTGTCGTGGATTTTGAAGGCAATGAAATCACCTTTACCAAACAAGATAT
GATGGAATTGACCCATGCTTATTGTACTTCTATTCATAAAGCACAAGGCTCAGAGTTTCCAATTGTTATTATGCCGATTG
TAAAACAATATTATCGTATGTTGCAGAGACCGATAATTTATACTGGTTTAACACGTGCGAAACAATCATTAGTGTTCTTA
GGTGACAGTCAAGCTTTCGACATCGGTATGAAGACACATGGCCAAGTGCGTATGACGAGACTTGCTCAATTGTTGAGAGA
TTATTTCGGTACAGATGATGAAGCGAATGCTAATAAGAATGAAGGTCAAAATGATTCTGCACAAACAGCAGCTGCACAAC
ATTTAGTAGAATTAACAGAAGATACGATTTATGAAATCGATCCGATGATTGGTATGGGCAATGTGACACCCTATACCTTT
AACCAAGCATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-544)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

53.226

92.653

0.493

Multiple sequence alignment