Detailed information NTG1088456

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACLD94_RS07825
• Genome accession: NZ_CP178220
• Coordinates: 1556963..1557742 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain JN-Y2
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1551963..1562742

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLD94_RS07805 (ACLD94_07805)	trmFO	1552650..1553957 (+)	1308	WP_012117550.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACLD94_RS07810 (ACLD94_07810)	xerC	1554027..1554944 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
ACLD94_RS07815 (ACLD94_07815)	hslV	1554960..1555505 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
ACLD94_RS07820 (ACLD94_07820)	hslU	1555522..1556925 (+)	1404	WP_007611413.1	HslU--HslV peptidase ATPase subunit	-
ACLD94_RS07825 (ACLD94_07825)	codY	1556963..1557742 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACLD94_RS07830 (ACLD94_07830)	flgB	1558096..1558485 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ACLD94_RS07835 (ACLD94_07835)	flgC	1558485..1558937 (+)	453	WP_007409776.1	flagellar basal body rod protein FlgC	-
ACLD94_RS07840 (ACLD94_07840)	fliE	1558948..1559268 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ACLD94_RS07845 (ACLD94_07845)	fliF	1559311..1560921 (+)	1611	WP_032874889.1	flagellar basal-body MS-ring/collar protein FliF	-
ACLD94_RS07850 (ACLD94_07850)	fliG	1560934..1561950 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACLD94_RS07855 (ACLD94_07855)	fliH	1561943..1562698 (+)	756	WP_032874891.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1088456 ACLD94_RS07825 WP_003154263.1 1556963..1557742(+) (codY) [Bacillus velezensis strain JN-Y2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1088456 ACLD94_RS07825 WP_003154263.1 1556963..1557742(+) (codY) [Bacillus velezensis strain JN-Y2]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471