Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACLII2_RS13345 Genome accession   NZ_CP178213
Coordinates   2526524..2527303 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis subsp. subtilis strain BM107     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2521524..2532303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLII2_RS13315 fliH 2521541..2522293 (-) 753 WP_003244804.1 flagellar assembly protein FliH -
  ACLII2_RS13320 fliG 2522286..2523302 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  ACLII2_RS13325 fliF 2523315..2524926 (-) 1612 Protein_2627 flagellar basal-body MS-ring/collar protein FliF -
  ACLII2_RS13330 fliE 2524972..2525292 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  ACLII2_RS13335 flgC 2525303..2525755 (-) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  ACLII2_RS13340 flgB 2525755..2526144 (-) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  ACLII2_RS13345 codY 2526524..2527303 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACLII2_RS13350 hslU 2527343..2528746 (-) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  ACLII2_RS13355 clpQ 2528763..2529308 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  ACLII2_RS13360 xerC 2529321..2530235 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  ACLII2_RS13365 trmFO 2530303..2531610 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=1088309 ACLII2_RS13345 WP_003220850.1 2526524..2527303(-) (codY) [Bacillus subtilis subsp. subtilis strain BM107]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1088309 ACLII2_RS13345 WP_003220850.1 2526524..2527303(-) (codY) [Bacillus subtilis subsp. subtilis strain BM107]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment