Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CLC19172_RS04830 Genome accession   NZ_CP177362
Coordinates   902608..903336 (-) Length   242 a.a.
NCBI ID   WP_149062401.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19172     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 897608..908336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19172_RS04790 (CLC19172_0943) holA 898276..899241 (+) 966 WP_257395734.1 DNA polymerase III subunit delta -
  CLC19172_RS04795 (CLC19172_0944) rpsF 899333..899707 (+) 375 WP_012661658.1 30S ribosomal protein S6 -
  CLC19172_RS04800 (CLC19172_0945) - 899711..900238 (+) 528 WP_115645698.1 single-stranded DNA-binding protein -
  CLC19172_RS04805 (CLC19172_0946) rpsR 900249..900509 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  CLC19172_RS04810 (CLC19172_0947) - 900561..901202 (+) 642 WP_039668498.1 MarC family protein -
  CLC19172_RS04815 (CLC19172_0948) - 901184..901606 (-) 423 WP_257395733.1 hypothetical protein -
  CLC19172_RS04820 (CLC19172_0949) - 901603..902331 (-) 729 WP_257395732.1 type II secretion system protein -
  CLC19172_RS04825 (CLC19172_0950) - 902315..902611 (-) 297 WP_039668500.1 hypothetical protein -
  CLC19172_RS04830 (CLC19172_0951) proC 902608..903336 (-) 729 WP_149062401.1 pyrroline-5-carboxylate reductase Machinery gene
  CLC19172_RS04835 (CLC19172_0952) fliW 903336..903731 (-) 396 WP_012661666.1 flagellar assembly protein FliW -
  CLC19172_RS04840 (CLC19172_0953) bamD 903908..904564 (+) 657 WP_257395731.1 outer membrane protein assembly factor BamD -
  CLC19172_RS04845 (CLC19172_0954) lon 904564..906942 (+) 2379 WP_257395730.1 endopeptidase La -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26565.81 Da        Isoelectric Point: 7.2639

>NTDB_id=1086920 CLC19172_RS04830 WP_149062401.1 902608..903336(-) (proC) [Campylobacter lari subsp. concheus strain RM19172]
MSEIYILGNGAMASAIAKGLKDTYKVVVVARDLKKASSLNLEVLSYEEFDLEDKNVILAFKPYALEEVAVKLKGKARWLI
SVLANTTFEQLHCVNAQNYIKIMPNTAAEFKASATAYLMENDLYKHEIISLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELTRACFESFSALFNHTHPAIIKEKICSPAGVTIRGVEALEKRALRGAFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=1086920 CLC19172_RS04830 WP_149062401.1 902608..903336(-) (proC) [Campylobacter lari subsp. concheus strain RM19172]
ATGTCTGAAATTTATATTTTAGGAAATGGCGCTATGGCAAGTGCTATAGCTAAAGGTTTAAAAGATACTTATAAAGTAGT
TGTTGTTGCTAGGGATTTAAAAAAAGCCAGTAGCTTAAATTTAGAAGTTTTATCTTATGAAGAATTTGATTTAGAAGATA
AAAATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAAGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAGCAACTTCATTGTGTTAATGCACAAAATTATATAAAAATTATGCCAAATACAGC
AGCTGAATTTAAAGCCTCAGCGACTGCGTATTTGATGGAAAATGATTTATATAAACATGAAATTATATCTTTGTTAAATA
CTTTTGGTAAAGCCATAAGTTTGCAAAATGAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGGTGTGCTCCTGCGTTT
TTGGCTTTGGTAGCAGAAAGTTTAGCAAATGCAGGTGTGAAAAATGGTTTAAAAAATGAGCTTAGCTATGAGCTTACGCG
TGCTTGTTTTGAAAGCTTTAGTGCTTTGTTTAACCATACACATCCTGCTATTATTAAAGAAAAAATTTGTTCTCCAGCAG
GGGTGACTATAAGAGGAGTTGAGGCTTTAGAAAAAAGAGCTTTGCGCGGTGCTTTTTTTGAAGCTTTTAATGCAAGTTTA
AATAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

57.741

98.76

0.57

Multiple sequence alignment