Detailed information NTG1086539

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACLF6N_RS09275
• Genome accession: NZ_CP177279
• Coordinates: 1741567..1742346 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis strain KFRI-P74
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1736567..1747346

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLF6N_RS09255 (ACLF6N_09255)	trmFO	1737260..1738567 (+)	1308	WP_069837510.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACLF6N_RS09260 (ACLF6N_09260)	xerC	1738635..1739549 (+)	915	WP_014479777.1	tyrosine recombinase XerC	-
ACLF6N_RS09265 (ACLF6N_09265)	clpQ	1739562..1740107 (+)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
ACLF6N_RS09270 (ACLF6N_09270)	hslU	1740124..1741527 (+)	1404	WP_014476801.1	HslU--HslV peptidase ATPase subunit	-
ACLF6N_RS09275 (ACLF6N_09275)	codY	1741567..1742346 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACLF6N_RS09280 (ACLF6N_09280)	flgB	1742726..1743115 (+)	390	WP_014479778.1	flagellar basal body rod protein FlgB	-
ACLF6N_RS09285 (ACLF6N_09285)	flgC	1743115..1743567 (+)	453	WP_014479779.1	flagellar basal body rod protein FlgC	-
ACLF6N_RS09290 (ACLF6N_09290)	fliE	1743578..1743898 (+)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
ACLF6N_RS09295 (ACLF6N_09295)	fliF	1743944..1745554 (+)	1611	WP_046160402.1	flagellar basal-body MS-ring/collar protein FliF	-
ACLF6N_RS09300 (ACLF6N_09300)	fliG	1745567..1746583 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
ACLF6N_RS09305 (ACLF6N_09305)	fliH	1746576..1747328 (+)	753	WP_014479782.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=1086539 ACLF6N_RS09275 WP_003220850.1 1741567..1742346(+) (codY) [Bacillus subtilis strain KFRI-P74]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1086539 ACLF6N_RS09275 WP_003220850.1 1741567..1742346(+) (codY) [Bacillus subtilis strain KFRI-P74]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467