Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ACLF6M_RS10710 Genome accession   NZ_CP177252
Coordinates   2233374..2233982 (+) Length   202 a.a.
NCBI ID   WP_412026610.1    Uniprot ID   -
Organism   Deinococcus yunweiensis strain KCTC 3955     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2228374..2238982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLF6M_RS10695 (ACLF6M_10695) - 2228804..2229481 (+) 678 WP_412026608.1 NUDIX hydrolase -
  ACLF6M_RS10700 (ACLF6M_10700) - 2229553..2232594 (-) 3042 WP_412026609.1 vWA domain-containing protein -
  ACLF6M_RS10705 (ACLF6M_10705) - 2233013..2233303 (+) 291 WP_295822516.1 YbaB/EbfC family nucleoid-associated protein -
  ACLF6M_RS10710 (ACLF6M_10710) recR 2233374..2233982 (+) 609 WP_412026610.1 recombination mediator RecR Machinery gene
  ACLF6M_RS10715 (ACLF6M_10715) - 2233998..2234702 (-) 705 WP_412026611.1 polysaccharide deacetylase family protein -
  ACLF6M_RS10720 (ACLF6M_10720) - 2234704..2235906 (-) 1203 WP_412026612.1 MFS transporter -
  ACLF6M_RS10725 (ACLF6M_10725) - 2235960..2236658 (+) 699 WP_412026613.1 glycosyltransferase family 2 protein -
  ACLF6M_RS10730 (ACLF6M_10730) - 2236594..2237781 (-) 1188 WP_412026614.1 glycosyltransferase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21831.14 Da        Isoelectric Point: 6.0117

>NTDB_id=1086476 ACLF6M_RS10710 WP_412026610.1 2233374..2233982(+) (recR) [Deinococcus yunweiensis strain KCTC 3955]
MKYPPSLVALIRELSRLPGIGAKSAQRLAFHLFEQPREDIERLASALLEAKRDLHSCPICFNITDAERCDVCSDSSRDQS
VICVVEEPGDVLAIERSGEYRGLYHVLHGVLSPMNGVGPDRLHIKPLLPRVAEGMEIILATGTTVEGDATALYLGRLLEP
LGATVSRIAYGLPVGGALEYADEVTLGRAMAGRQRVSKPTAS

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1086476 ACLF6M_RS10710 WP_412026610.1 2233374..2233982(+) (recR) [Deinococcus yunweiensis strain KCTC 3955]
ATGAAATATCCTCCCTCCCTGGTCGCCCTGATCCGCGAGCTGTCGCGCCTGCCCGGCATCGGTGCGAAGAGCGCTCAGCG
GCTTGCCTTCCACCTCTTCGAGCAGCCCCGCGAGGACATCGAGCGGCTGGCCTCTGCGCTGCTGGAAGCCAAGCGTGACC
TGCACTCTTGCCCCATCTGCTTCAACATCACCGATGCCGAGCGCTGCGACGTGTGCAGTGATTCCAGCCGCGACCAGAGC
GTGATCTGCGTGGTCGAGGAACCCGGCGACGTGCTGGCGATCGAGCGAAGCGGCGAGTACCGGGGCCTGTATCACGTCCT
GCACGGCGTCCTGAGCCCCATGAACGGCGTCGGGCCAGACCGCCTGCACATCAAGCCCCTGCTGCCCCGCGTCGCCGAGG
GCATGGAGATCATCCTGGCGACCGGCACCACCGTCGAGGGTGACGCCACGGCGCTGTATCTCGGGCGTCTGCTCGAACCC
CTGGGAGCCACGGTCAGCCGCATCGCGTATGGCCTGCCGGTGGGCGGGGCGCTGGAGTACGCCGACGAGGTGACCCTCGG
CCGCGCCATGGCCGGTCGTCAGCGGGTCAGCAAGCCGACGGCGAGCTGA

Domains

Predicted by InterproScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

88.442

98.515

0.871

Multiple sequence alignment