Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SP5448_RS08300 Genome accession   NZ_CP008776
Coordinates   1651541..1652809 (+) Length   422 a.a.
NCBI ID   WP_011285735.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 5448     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1646541..1657809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP5448_RS08275 (SP5448_08600) - 1646709..1647458 (-) 750 WP_010922697.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  SP5448_RS08280 (SP5448_08605) prmA 1647458..1648411 (-) 954 WP_010922698.1 50S ribosomal protein L11 methyltransferase -
  SP5448_RS08285 (SP5448_08610) - 1648482..1648952 (-) 471 WP_011285734.1 DUF3013 family protein -
  SP5448_RS08290 (SP5448_08615) pabB 1649152..1650909 (+) 1758 WP_010922700.1 aminodeoxychorismate synthase component I -
  SP5448_RS08295 (SP5448_08620) - 1650942..1651508 (+) 567 WP_010922701.1 aminodeoxychorismate/anthranilate synthase component II -
  SP5448_RS08300 (SP5448_08625) rarA 1651541..1652809 (+) 1269 WP_011285735.1 replication-associated recombination protein A Machinery gene
  SP5448_RS08310 (SP5448_08635) - 1653306..1653746 (+) 441 WP_010922703.1 GNAT family N-acetyltransferase -
  SP5448_RS08315 (SP5448_08640) - 1653801..1654307 (+) 507 WP_010922704.1 DNA topology modulation protein -
  SP5448_RS08320 (SP5448_08645) smeZ 1654556..1655257 (+) 702 WP_010922705.1 streptococcal mitogenic exotoxin SmeZ -
  SP5448_RS08325 (SP5448_08650) - 1655541..1655807 (-) 267 WP_011285736.1 hypothetical protein -
  SP5448_RS08330 (SP5448_08655) - 1655986..1657614 (+) 1629 WP_010922707.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46615.04 Da        Isoelectric Point: 6.3774

>NTDB_id=108637 SP5448_RS08300 WP_011285735.1 1651541..1652809(+) (rarA) [Streptococcus pyogenes strain 5448]
MPDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=108637 SP5448_RS08300 WP_011285735.1 1651541..1652809(+) (rarA) [Streptococcus pyogenes strain 5448]
ATGCCTGATCATTTAGCGCTCAGAATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAAAACACCTTGTTGGCGAAGG
CAAAATCATCCGTCGCATGGTGGAAGCAAATAGACTATCGTCCATGATCCTCTATGGCCCTCCAGGAATCGGTAAAACTT
CCATTGCTTCTGCTATTGCTGGTACTACTAGATATGCCTTTCGGACCTTTAATGCCACCATTGACAGCAAAAAACGTCTC
CAAGAAATTGCGGAAGAAGCTAAATTTTCTGGTGGCTTGGTATTATTACTAGACGAGATTCATCGCCTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCACCATTATCATGATTGGCGCAACCACTGAGAACCCCTTCTTTTCAG
TGACACCCGCTATCAGAAGCAGGGTCCAAATTTTTGAATTGGAACCACTTTCTAACGAGGATATTAAAACAGCCATTCAG
CTAGCAATTTCCGACAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGTC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACCATGGATAAAAACGGGGACGGGCATTAT
GATGTTTTATCTGCCTTACAAAAATCCATTAGAGGTTCTGATGTCAATGCTAGCCTGCACTATGCCGCTCGTTTAGTAGA
AGCTGGAGACTTGCCTAGTTTAGCAAGACGATTGACCATTATTGCTTACGAAGATATTGGCTTAGCCAACCCTGACGCCC
AAGTTCATACCGTCACCGCACTAGATGCCGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATCGCTAACGTGGTC
ATTGATTTGGCTCTATCACCTAAATCCAATTCAGCTTATTTAGCTATGGATGCAGCTTTAGCTGATTTGAGAACATCAGG
CAACCTCCCCATTCCAAGACATCTTAGAGACGGGCATTATGCTGGCAGCAAGGACCTAGGCAATGCCAAAGATTACCTCT
ACCCACACGCCTACCCTGAAAAATGGGTCAAACAACAATACCTACCAGATAAATTAGTAGGACATCATTATTTTGAAGCC
AATGAAACCGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGTATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(174-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.952

98.815

0.592

Multiple sequence alignment