Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   UPTC17655_RS05025 Genome accession   NZ_CP177187
Coordinates   979755..980483 (-) Length   242 a.a.
NCBI ID   WP_257933163.1    Uniprot ID   -
Organism   Campylobacter lari strain RM17655     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 974755..985483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC17655_RS04985 (UPTC17655_0981) holA 975423..976388 (+) 966 WP_087685035.1 DNA polymerase III subunit delta -
  UPTC17655_RS04990 (UPTC17655_0982) rpsF 976479..976853 (+) 375 WP_012661658.1 30S ribosomal protein S6 -
  UPTC17655_RS04995 (UPTC17655_0983) - 976857..977384 (+) 528 WP_047208374.1 single-stranded DNA-binding protein -
  UPTC17655_RS05000 (UPTC17655_0984) rpsR 977396..977656 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  UPTC17655_RS05005 (UPTC17655_0985) - 977708..978349 (+) 642 WP_214097550.1 MarC family protein -
  UPTC17655_RS05010 (UPTC17655_0986) - 978325..978753 (-) 429 WP_214097549.1 hypothetical protein -
  UPTC17655_RS05015 (UPTC17655_0987) - 978750..979478 (-) 729 WP_214097548.1 type II secretion system protein -
  UPTC17655_RS05020 (UPTC17655_0988) - 979462..979758 (-) 297 WP_087685030.1 hypothetical protein -
  UPTC17655_RS05025 (UPTC17655_0989) proC 979755..980483 (-) 729 WP_257933163.1 pyrroline-5-carboxylate reductase Machinery gene
  UPTC17655_RS05030 (UPTC17655_0990) fliW 980483..980878 (-) 396 WP_012661666.1 flagellar assembly protein FliW -
  UPTC17655_RS05035 (UPTC17655_0991) bamD 981055..981711 (+) 657 WP_039618532.1 outer membrane protein assembly factor BamD -
  UPTC17655_RS05040 (UPTC17655_0992) lon 981711..984089 (+) 2379 WP_039641703.1 endopeptidase La -
  UPTC17655_RS05045 (UPTC17655_0993) - 984104..985483 (-) 1380 WP_412097431.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26541.68 Da        Isoelectric Point: 6.4868

>NTDB_id=1086090 UPTC17655_RS05025 WP_257933163.1 979755..980483(-) (proC) [Campylobacter lari strain RM17655]
MSEIYILGNGAMASAIAKGLKDTYKVVIVARDLKKASSLNLEVLSYEEFDLEDKNVILAFKPYALEEVAVKLKGKARWLI
SVLANTTFEQLYCVNAQNYIKIMPNTAAEFKASATAYLMENDSYKDEILSLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELTRASFESFSALFNHTHPAIIKEKICSPAGVTIRGVEALEKRALRGAFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=1086090 UPTC17655_RS05025 WP_257933163.1 979755..980483(-) (proC) [Campylobacter lari strain RM17655]
ATGTCTGAAATTTATATTTTAGGAAATGGTGCTATGGCAAGTGCTATAGCTAAAGGTTTGAAAGATACTTATAAAGTAGT
TATTGTTGCTAGGGATTTAAAAAAAGCTAGTAGCTTAAATTTAGAAGTTTTATCTTATGAAGAATTTGATTTAGAAGATA
AAAATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAGGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAGCAACTTTATTGTGTTAATGCGCAAAATTATATAAAAATCATGCCAAATACAGC
AGCTGAATTTAAAGCCTCAGCGACTGCGTATTTGATGGAAAATGATTCATATAAAGATGAAATTTTATCTTTGTTAAATA
CTTTTGGTAAAGCCATAAGTTTACAAAATGAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGCTGTGCTCCTGCGTTT
TTGGCTTTGGTAGCAGAAAGTTTAGCAAATGCAGGTGTGAAAAATGGTTTAAAAAATGAGCTTAGTTATGAGCTTACTCG
TGCAAGTTTTGAAAGCTTTAGTGCTTTGTTTAACCATACACATCCTGCTATTATTAAAGAAAAAATTTGTTCTCCAGCAG
GGGTGACTATAAGAGGGGTTGAGGCTTTAGAAAAAAGAGCTTTACGCGGTGCTTTTTTTGAAGCTTTTAATGCAAGTTTA
AACAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

58.577

98.76

0.579

Multiple sequence alignment